Alignments for a candidate for argG in Saccharomonospora cyanea NA-134

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_005457881.1 SACCYDRAFT_RS16625 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000244975.1:WP_005457881.1
          Length = 401

 Score =  333 bits (855), Expect = 4e-96
 Identities = 166/391 (42%), Positives = 257/391 (65%), Gaps = 2/391 (0%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQG-EEVEEAREKALRTGASKAIALD 60
           ++VLAYSGGLDTS+ + W+ E   AEV+A   D+GQG E++E  R++AL  GA +A+  D
Sbjct: 4   RVVLAYSGGLDTSVAIGWIAEETGAEVVAVAVDLGQGGEDLETIRKRALDCGAVEAVVAD 63

Query: 61  LKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGN 120
            ++EF  D+  P ++A A+Y   Y L ++++RPLI KHL   A+  GA  +AHG TGKGN
Sbjct: 64  ARDEFADDYCLPALQANALYMDRYPLVSALSRPLIVKHLAEAAKYHGATTVAHGCTGKGN 123

Query: 121 DQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLH 180
           DQVRFE+   AL PD+ VIAP R++++  R++ IAYAE   +P+ VT++ P+S+D N+  
Sbjct: 124 DQVRFEVGIGALAPDLNVIAPVRDFAWT-REKAIAYAEERNLPIDVTKKSPFSIDQNVWG 182

Query: 181 ISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQ 240
            + E G+LED W EPPK ++  TQDP     AP+ V + F +G PVA++G+ ++    +Q
Sbjct: 183 RAVETGILEDLWNEPPKEVYSYTQDPTVHFQAPDEVVITFKKGVPVAIDGKEVTVLEAIQ 242

Query: 241 RLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDM 300
            +N   G HG+GR+D+VE+R VG+KSR VYE PG   L  A + +E++T++R++   +  
Sbjct: 243 EMNRRAGAHGIGRLDMVEDRLVGIKSREVYEAPGAIALITAHQELENVTVERDLARFKRQ 302

Query: 301 LSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQ 360
           +  ++ ELVY G W++P +EAL  +       V+G  R+ L+ GN  V GR++ +SLY  
Sbjct: 303 VEQRWGELVYDGLWFSPLKEALDGFVAKAQEHVSGDIRMILHGGNATVTGRRSDESLYDF 362

Query: 361 DLVSFDEAGGYDQKDAEGFIKIQALRLRVRA 391
           +L ++DE   +DQ  A+GF+++  L  ++ A
Sbjct: 363 NLATYDEGDTFDQSLAKGFVQLWGLPSKIAA 393


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 433
Number of extensions: 19
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 401
Length adjustment: 31
Effective length of query: 369
Effective length of database: 370
Effective search space:   136530
Effective search space used:   136530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_005457881.1 SACCYDRAFT_RS16625 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.31028.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31028.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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