Alignments for a candidate for argC in Saccharomonospora cyanea NA-134

Align N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) (characterized)
to candidate WP_005457891.1 SACCYDRAFT_RS16655 N-acetyl-gamma-glutamyl-phosphate reductase

Query= BRENDA::P9WPZ9
         (352 letters)



>NCBI__GCF_000244975.1:WP_005457891.1
          Length = 342

 Score =  416 bits (1069), Expect = e-121
 Identities = 211/344 (61%), Positives = 251/344 (72%), Gaps = 7/344 (2%)

Query: 11  KVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVV 70
           K AVAGA+GYAGGE+LRLLL HP      + IGALTAA+SAG+ LG+H PHL PLA R+V
Sbjct: 4   KAAVAGATGYAGGELLRLLLAHPD-----IEIGALTAASSAGTPLGQHQPHLGPLADRLV 58

Query: 71  EPTEAAVLGGHDAVFLALPHGHSAVLAQQLSPETLIIDCGADFRLTDAAVWERFYGSSHA 130
           + T A  L GHD VFLALPHGHS  +A QL  E L+ID GAD RLTDA+ WER+YGS H 
Sbjct: 59  QETTAETLAGHDVVFLALPHGHSGGIAAQLGDEALVIDLGADHRLTDASDWERWYGSEHV 118

Query: 131 GSWPYGLPELPGARDQLRGTRRIAVPGCYPTAALLALFPALAADLIEPAVTVVAVSGTSG 190
           G+WPYGLPELPG R+ LRGT R+AVPGC+PT   LAL PA AA L+ P VT+V+V+GTSG
Sbjct: 119 GTWPYGLPELPGGRESLRGTTRVAVPGCFPTGGSLALAPAFAAGLLRPEVTIVSVTGTSG 178

Query: 191 AGRAATTDLLGAEVIGSARAYNIAGVHRHTPEIAQGLRAVTDRDVSVSFTPVLIPASRGI 250
           AG++    LLG+EV+GSA AY + G HRHTPE  Q L AV  R V+VSFTPVL P  RGI
Sbjct: 179 AGKSLKPHLLGSEVMGSASAYGVGGAHRHTPEFVQNLSAVAGRPVTVSFTPVLAPMPRGI 238

Query: 251 LATCTARTRSPLSQ--LRAAYEKAYHAEPFIYLMPEGQLPRTGAVIGSNAAHIAVAVDED 308
           L T +A     ++   +R+ YEKAY  E F+ ++PEG  P T A +GSN   + VAVD D
Sbjct: 239 LTTASAPLAGDVAHDTVRSVYEKAYGDEHFVSVLPEGVWPTTAATVGSNMVLLQVAVDVD 298

Query: 309 AQTFVAIAAIDNLVKGTAGAAVQSMNLALGWPETDGLSVVGVAP 352
           A   V +AA+DNL KGTAGAAVQSMN+ALG PET GL + GVAP
Sbjct: 299 ADRLVVVAALDNLTKGTAGAAVQSMNIALGLPETAGLPMTGVAP 342


Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 434
Number of extensions: 21
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 342
Length adjustment: 29
Effective length of query: 323
Effective length of database: 313
Effective search space:   101099
Effective search space used:   101099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_005457891.1 SACCYDRAFT_RS16655 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.24230.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24230.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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