Alignments for a candidate for thrB in Saccharomonospora cyanea NA-134

Align homoserine kinase (EC 2.7.1.39) (characterized)
to candidate WP_005458792.1 SACCYDRAFT_RS19470 homoserine kinase

Query= BRENDA::P07128
         (309 letters)



>NCBI__GCF_000244975.1:WP_005458792.1
          Length = 306

 Score =  245 bits (625), Expect = 1e-69
 Identities = 145/300 (48%), Positives = 186/300 (62%), Gaps = 15/300 (5%)

Query: 10  KVTVTVPGSSANLGPGFDTLGLALSVYDTVEVEIIPSGLEVEVFGEGQGE---VPLDGSH 66
           K T+TVP S+ANLGPGFDT GLAL+++D VEVE+  SGL VEV   G G+   VP D SH
Sbjct: 2   KYTITVPASTANLGPGFDTFGLALALHDVVEVEVTGSGLSVEVIDAGAGDMSGVPTDESH 61

Query: 67  LVVKAIRAGLKAADAEVPGLRVVCHNNIPQSRGLGSSAAAAVAGVAAANGLADFPLTQEQ 126
           LVV+A+R   +  D  VPG+ + CHN IP +RGLGSSAAA VAGVAA   LA   +  E 
Sbjct: 62  LVVRALRRACRHLDVAVPGVALRCHNAIPHARGLGSSAAAVVAGVAAGYALAGKDI-DEG 120

Query: 127 IVQLSSAFEGHPDNAAASVLGGAVVSWTNLSIDGKSQPQYAAVPLEVQDNIRATALVPNF 186
            +QL+S FEGH DNAAAS+LGG VV+W       +S   + A  L     IR    VP+ 
Sbjct: 121 ALQLASEFEGHADNAAASLLGGFVVAW-------QSGATFHAERLSPHSAIRPVVAVPDE 173

Query: 187 HASTEAVRRVLPTEVTHIDARFNVSRVAVMIVALQQRPDLLWEGTRDRLHQPYRAEVLPI 246
            ++T+  R +LP  V H DA F  SR A+ + A+  RPDLL+  T DRLHQ YR    P 
Sbjct: 174 RSATDQTRGLLPDYVPHGDAAFTASRSALAVHAVTTRPDLLFAATEDRLHQEYREPAYPA 233

Query: 247 TSEWVNRLRNRGYAAYLSGAGPTAMVLSTEPIPDKVLEDARESGIKVLELEVAGPVKVEV 306
           +   +  LR+RG AA +SGAGPT + L+T  I   + E    +G +V+EL +  PV V +
Sbjct: 234 SVRLMRALRSRGVAAVISGAGPTVLALTTTGI---LPEGVDVTGFEVMELPI-DPVGVRL 289


Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 248
Number of extensions: 12
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 306
Length adjustment: 27
Effective length of query: 282
Effective length of database: 279
Effective search space:    78678
Effective search space used:    78678
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate WP_005458792.1 SACCYDRAFT_RS19470 (homoserine kinase)
to HMM TIGR00191 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.21887.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21887.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.