Alignments for a candidate for asd in Saccharomonospora cyanea NA-134

Align aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (characterized)
to candidate WP_005459950.1 SACCYDRAFT_RS23290 aspartate-semialdehyde dehydrogenase

Query= BRENDA::P9WNX5
         (345 letters)



>NCBI__GCF_000244975.1:WP_005459950.1
          Length = 345

 Score =  473 bits (1218), Expect = e-138
 Identities = 252/340 (74%), Positives = 277/340 (81%), Gaps = 1/340 (0%)

Query: 2   GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETAD 61
           G+ +G+VGATGQVG VMR LL+ERDFP   +R+FAS+RS G  L +RG+EIEVEDA TAD
Sbjct: 3   GMRVGVVGATGQVGAVMRRLLEERDFPVERMRYFASSRSAGTTLPWRGEEIEVEDAATAD 62

Query: 62  PSGLDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRRP 121
           PSGLDIALFSAG A SK QAPRFA AGVTVIDNSSAWR DPDVPLVVSEVN       R 
Sbjct: 63  PSGLDIALFSAGGATSKAQAPRFAEAGVTVIDNSSAWRLDPDVPLVVSEVNPHAVKDAR- 121

Query: 122 KGIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAVIGGA 181
           KGIIANPNCTTMAAMPVLK LH+EA LVRLVVSSYQAVSGSGLAGV ELA Q RA    A
Sbjct: 122 KGIIANPNCTTMAAMPVLKPLHEEANLVRLVVSSYQAVSGSGLAGVEELASQVRAAGERA 181

Query: 182 EQLVYDGGALEFPPPNTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKILGIPDL 241
            +LV+DG A++   P  YV PIAFNV+P+AGS+VDDGS ETDE+QKLR ESRKIL IP L
Sbjct: 182 TELVHDGAAVDLGEPAKYVRPIAFNVLPMAGSIVDDGSWETDEEQKLRNESRKILDIPGL 241

Query: 242 LVSGTCVRVPVFTGHSLSINAEFAQPLSPERARELLDGATGVQLVDVPTPLAAAGVDESL 301
            VSGTCVRVPVFTGH+LSINAEF +PLS E A  LL  A GV+L DVPTPL AAG D S 
Sbjct: 242 KVSGTCVRVPVFTGHALSINAEFERPLSVEAATRLLSTAPGVRLSDVPTPLEAAGNDPSY 301

Query: 302 VGRIRRDPGVPDGRGLALFVSGDNLRKGAALNTIQIAELL 341
           VGR+R DPGV  GRGLALFV+GDNLRKGAALN +QIAEL+
Sbjct: 302 VGRLRADPGVDGGRGLALFVAGDNLRKGAALNAVQIAELV 341


Lambda     K      H
   0.317    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 445
Number of extensions: 16
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 345
Length adjustment: 29
Effective length of query: 316
Effective length of database: 316
Effective search space:    99856
Effective search space used:    99856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_005459950.1 SACCYDRAFT_RS23290 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.4889.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4889.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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