Alignments for a candidate for argH in Desulfitobacterium hafniense DCB-2

Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate WP_005808617.1 DHAF_RS04000 argininosuccinate lyase

Query= BRENDA::Q8DVX5
         (460 letters)



>NCBI__GCF_000021925.1:WP_005808617.1
          Length = 461

 Score =  492 bits (1266), Expect = e-143
 Identities = 248/443 (55%), Positives = 322/443 (72%)

Query: 7   KLWGGRFEAGLAQWVEEFGASISFDQKLAEFDLKGSIAHVTMLGEKGIISQEDAATIKAG 66
           KLWGGRFE      VE+F +SISFDQ+L + D++GSIAH  MLGE G+++  +A  I  G
Sbjct: 2   KLWGGRFEKSTDALVEDFHSSISFDQRLYKQDIQGSIAHARMLGEIGVLTSAEAQQIIEG 61

Query: 67  LEDLLEEYKAGQLKFDVSNEDIHMNMESLLTAKIGPVAGKLHTARSRNDQVATDMHLYLK 126
           L+ +L + + G+++F++  EDIHMN+E LLT ++G V  K+HT RSRNDQVA D+ L+L+
Sbjct: 62  LKGILTDIREGKIQFEIGAEDIHMNVEKLLTERVGTVGKKVHTGRSRNDQVALDLRLFLR 121

Query: 127 AKLDEVIEKLANLRTVLVDLADKHVHTIMPGYTHLQHAQPISFGHHLMAYYNMFTRDSER 186
            ++D   E L  L   ++DLA +H  T MPGYTHLQ AQPISF HH+MAY  MF RD  R
Sbjct: 122 EEIDHTQELLIALLRTVLDLAKEHQETYMPGYTHLQKAQPISFAHHMMAYAQMFLRDLGR 181

Query: 187 FIFNVKHTDLSPLGAAALAGTTFPIDREMTAQLMGFAEPYSNSLDAVSDRDFILEFLSNA 246
                +  ++SPLG+ ALAGTTFP++REM AQ +GF     NSLD VSDRDF LEFLS A
Sbjct: 182 LKDTRQRLNVSPLGSGALAGTTFPLEREMVAQELGFDGITWNSLDGVSDRDFALEFLSAA 241

Query: 247 SILMMHMSRMCEEVISWCSHEYQFVTLSDTFSTGSSIMPQKKNPDMAELIRGKSGRVYAN 306
           SILMMH+SR+CEE++ W + E+QFV + D +STGSSIMPQKKNPD+AEL+RGK+GRVY +
Sbjct: 242 SILMMHLSRLCEELVLWSTGEFQFVIMDDGYSTGSSIMPQKKNPDVAELVRGKTGRVYGD 301

Query: 307 LFGLLTVMKALPLAYNKDLQEDKEGMFDTAETITVALDILAGMLSSMIVNDKHMAESTQK 366
           L  LLTVMK LPLAYNKD+QEDKE +FD  +TI  +L ++  ML +M VN K MAE  + 
Sbjct: 302 LVALLTVMKGLPLAYNKDMQEDKEQVFDAVDTIQKSLLVVEPMLRTMKVNKKAMAEGAKG 361

Query: 367 DFSNATELADYLASKGMPFRQAHEIVGKLILECSKNGHYLQDVPLERYQTISDLIEEDVY 426
            F+NAT+LADYLA K +PFR+AHEIVGKL+L CSK G  L+D+ L+ +Q  SD+  ED++
Sbjct: 362 GFTNATDLADYLAKKNVPFREAHEIVGKLVLYCSKRGCGLEDLTLKEFQEHSDVFAEDLF 421

Query: 427 ETLKSHTAVERRHSLGGTGFEQV 449
           E++     V +RH  GG   E V
Sbjct: 422 ESIGIEYCVRQRHIPGGPSPESV 444


Lambda     K      H
   0.318    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 586
Number of extensions: 16
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 461
Length adjustment: 33
Effective length of query: 427
Effective length of database: 428
Effective search space:   182756
Effective search space used:   182756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_005808617.1 DHAF_RS04000 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.16281.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16281.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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