Alignments for a candidate for asp-kinase in Desulfitobacterium hafniense DCB-2

Align aspartate kinase 1; EC 2.7.2.4 (characterized)
to candidate WP_005808827.1 DHAF_RS18265 aspartate kinase

Query= CharProtDB::CH_090816
         (404 letters)



>NCBI__GCF_000021925.1:WP_005808827.1
          Length = 409

 Score =  419 bits (1078), Expect = e-122
 Identities = 223/406 (54%), Positives = 286/406 (70%), Gaps = 4/406 (0%)

Query: 1   MKIIVQKFGGTSVKDDKGRKLALGHIKEAISEGYKVVVVVSAMGRKGDPYATDSLLGLLY 60
           M+++VQKFGGTSV   + R      + EA+ EGY  VVVVSA+GR GDPYATD+ + L+ 
Sbjct: 1   MRVLVQKFGGTSVSSAERRAQVAAKVSEAVREGYSPVVVVSAIGRSGDPYATDTFINLVN 60

Query: 61  GDQSAISPREQDLLLSCGETISSVVFTSMLLDNGVKAAALTGAQAGFLTNDQHTNAKIIE 120
           G       RE DLL+SCGE IS VV TS L   G++A  LTG QAG +TND + +A+II 
Sbjct: 61  GITLESPKREMDLLMSCGEIISGVVLTSTLKSMGLEAILLTGGQAGIITNDCYGDARIIR 120

Query: 121 MKPERLFSVLANHDAVVVAGFQGATEKGDTTTIGRGGSDTSAAALGAAVDAEYIDIFTDV 180
           ++P+ +   L+    VVV GFQG TE G  TT+GRGGSDT+A+ALG A++AE IDI+TDV
Sbjct: 121 VEPKGILDHLSEGRVVVVTGFQGVTEDGQVTTLGRGGSDTTASALGVALNAEAIDIYTDV 180

Query: 181 EGVMTADPRVVENAKPLPVVTYTEICNLAYQGAKVISPRAVEIAMQAKVPIRVRSTYSND 240
           EG+MTADPR+VE+A+ L VVTY EIC+LA+QGAKVI PRAVEIAMQ  +PI ++ T+S+ 
Sbjct: 181 EGIMTADPRIVEDARILDVVTYNEICHLAHQGAKVIHPRAVEIAMQRNIPIWIKCTFSDA 240

Query: 241 KGTLVTS-HHSSKVGSDVF-ERLITGIAHVKDVTQFKVPAK--IGQYNVQTEVFKAMANA 296
           +GTLVTS       G+D+  +R ITGIAH  +VTQ +VP         V  ++FK MA A
Sbjct: 241 RGTLVTSIQPDMGAGTDITGDRTITGIAHTPNVTQIQVPTHDVADVLQVDKQIFKGMALA 300

Query: 297 GISVDFFNITPSEIVYTVAGNKTETAQRILMDMGYDPMVTRNCAKVSAVGAGIMGVPGVT 356
            ISVDF ++ P  ++YTV     E A +IL ++G+ P     CAKVS VGAGI GVPGV 
Sbjct: 301 DISVDFISVQPESVLYTVPDEIAEKAMKILDNLGFKPTAVPGCAKVSIVGAGIAGVPGVM 360

Query: 357 SKIVSALSEKEIPILQSADSHTTIWVLVHEADMVPAVNALHEEFEL 402
           + +V ALS+  + ILQSADSHTTIWVLV++ DMVPAV ALH++F L
Sbjct: 361 ANMVEALSDAGVRILQSADSHTTIWVLVNKEDMVPAVQALHKKFLL 406


Lambda     K      H
   0.316    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 490
Number of extensions: 21
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 409
Length adjustment: 31
Effective length of query: 373
Effective length of database: 378
Effective search space:   140994
Effective search space used:   140994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_005808827.1 DHAF_RS18265 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.8202.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.8202.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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