Alignments for a candidate for asd in Caminibacter mediatlanticus TB-2

Align Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 (characterized)
to candidate WP_007472841.1 CMTB2_RS00260 aspartate-semialdehyde dehydrogenase

Query= SwissProt::P23247
         (337 letters)



>NCBI__GCF_000170735.1:WP_007472841.1
          Length = 350

 Score =  303 bits (776), Expect = 4e-87
 Identities = 166/334 (49%), Positives = 225/334 (67%), Gaps = 11/334 (3%)

Query: 5   FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNV--EEF 62
           +NVAI GATGAVGE +  VL+E  FPV +L  LAS RS GK   F G+T++V+ +  + F
Sbjct: 2   YNVAIVGATGAVGEELFRVLEEYNFPVKKLVPLASARSVGKEVEFKGETLKVKELTCDVF 61

Query: 63  DWSQVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR 122
           +  ++ IA FSAGG +SAK+AP A +AG VVIDNTS+FR D D+PLVVPEVNPE IA +R
Sbjct: 62  EKEEIDIAFFSAGGSVSAKFAPCAVKAGAVVIDNTSYFRMDKDVPLVVPEVNPEDIALWR 121

Query: 123 NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLN- 181
            + IIANPNCSTIQM+++L P++    I+R+ V TYQ+VSGAGK G++EL  Q   + N 
Sbjct: 122 KKGIIANPNCSTIQMVISLAPLHKEFNIKRVEVATYQAVSGAGKKGMEELFEQMRAIFNF 181

Query: 182 ---GYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVR 238
                  E   F  QIA N IP ID+FMDNG+T+EEMKMV ET KI +  +I V PTCVR
Sbjct: 182 KLDKVVDEREVFQYQIALNVIPHIDRFMDNGFTREEMKMVNETNKIMHS-NIEVAPTCVR 240

Query: 239 VPVFYGHAEAVHVETRAPIDAEQVMDMLEQTDGIELFRGA---DFPTQVRDAGGKDHVLV 295
           VPV   H+EA+ +     +D ++  ++LE  + I++       ++P  +  A   D+V V
Sbjct: 241 VPVLRSHSEAITIHCEKEVDVKRAREVLESFEDIKVIDNPEKNEYPMPI-IATDTDYVYV 299

Query: 296 GRVRNDISHHSGINLWVVADNVRKGAATNAVQIA 329
           GR+R D+  +  ++ + VAD +R GAATNAV+IA
Sbjct: 300 GRIRKDLFDNKTLHFFNVADQLRVGAATNAVRIA 333


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 346
Number of extensions: 16
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 350
Length adjustment: 29
Effective length of query: 308
Effective length of database: 321
Effective search space:    98868
Effective search space used:    98868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_007472841.1 CMTB2_RS00260 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.16512.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16512.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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