Alignments for a candidate for ilvI in Caminibacter mediatlanticus TB-2

Align acetohydroxyacid synthase subunit B (EC 2.2.1.6) (characterized)
to candidate WP_007473040.1 CMTB2_RS00750 acetolactate synthase large subunit

Query= metacyc::MONOMER-18810
         (585 letters)



>NCBI__GCF_000170735.1:WP_007473040.1
          Length = 565

 Score =  568 bits (1464), Expect = e-166
 Identities = 294/568 (51%), Positives = 388/568 (68%), Gaps = 6/568 (1%)

Query: 18  EMIGAEILVHALAEEGVEYVWGYPGGAVLYIYDELHKQTKFEHILVRHEQAAVHAADGYA 77
           +M GA I++ +L +E VE V+GYPGGA++ +YDE++KQ KF+HIL +HEQ AVH ADGYA
Sbjct: 2   KMTGARIVIESLIKENVEVVFGYPGGAIMNVYDEIYKQDKFKHILTKHEQGAVHMADGYA 61

Query: 78  RATGKVGVALVTSGPGVTNAVTGIATAYLDSIPMVVITGNVPTHAIGQDAFQECDTVGIT 137
           RATGKVGVA VTSGPG+TNA+TGIATAY DSIPMVVI+G VPT AIG DAFQE D VGIT
Sbjct: 62  RATGKVGVAFVTSGPGITNAITGIATAYTDSIPMVVISGQVPTTAIGTDAFQEVDAVGIT 121

Query: 138 RPIVKHNFLVKDVRDLAATIKKAFFIAATGRPGPVVVDIPKDVSRNACKYEYPKSIDMRS 197
           RPI KHNFLVKDV+DLA  IK+AF++A +GRPGPV +DIPK+V+ +  ++ YP+ ID+++
Sbjct: 122 RPITKHNFLVKDVKDLAYIIKEAFYLAKSGRPGPVHIDIPKNVTADMTEFIYPEKIDLKT 181

Query: 198 YNPVNKGHSGQIRKAVALLQGAERPYIYTGGGVVLANASDELRQLAALTGHPVTNTLMGL 257
           Y P  KG+   I++ V  ++ A++P  Y GGG VL+ AS+ +R++   T  P   TLM  
Sbjct: 182 YKPNYKGNKRAIKRTVEAIKNAKKPVFYIGGGSVLSGASNIIREIVKTTQIPAVETLMAR 241

Query: 258 GAFPGTSKQFVGMLGMHGTYEANMAMQNCDVLIAIGARFDDRVIGNPAHFTSQARKIIHI 317
           G         +GM+GMHG+Y ANMAM + D++I++GARFDDRV G    F   A  IIHI
Sbjct: 242 GVLRYDCPYLLGMVGMHGSYAANMAMNDADLIISLGARFDDRVTGKIDEFAKNA-DIIHI 300

Query: 318 DIDPSSISKRVKVDIPIVGNVKDVLQELIAQIKASDIKPKREALAKWWEQIEQWRSVDCL 377
           DIDPS I K V+   PIVG+VK VL+E++  +    I P R    +W E +++++ +  L
Sbjct: 301 DIDPSQIGKVVETKYPIVGDVKLVLEEMMPML-LDGIDPNR--YEEWREILKRYKELYPL 357

Query: 378 KYDRSSEIIKPQYVVEKIWELTKGDAFICSDVGQHQMWAAQFYKFDEPRRWINSGGLGTM 437
            Y  S E+IKPQ+V++K  EL   DA I +DVGQHQMWAAQFY F  P++++ SGGLGTM
Sbjct: 358 TYSDSDEVIKPQWVIQKTGELAPEDAIISTDVGQHQMWAAQFYPFTYPKQFLTSGGLGTM 417

Query: 438 GVGLPYAMGIKKAFPEKEVVTITGEGSIQMCIQELSTCLQYDTPVKICSLNNGYLGMVRQ 497
           G G P A+G K+   +K V+  TG+GSI M IQE+ T  +Y  PV    LNN YLGMVRQ
Sbjct: 418 GFGFPAALGAKEGKKDKVVINFTGDGSIVMNIQEVLTGYKYKLPVINIILNNNYLGMVRQ 477

Query: 498 WQEIEYDNRYSHSYM-DALPDFVKLAEAYGHVGMRVEKTSDVEPALREAFRLKDRTVFLD 556
           WQ + Y++R S + + D  PDF+KLAE+ G  G   +   + E    EA    +   F+D
Sbjct: 478 WQTMFYEDRLSETDLSDVQPDFIKLAESMGGRGFTAKTKEEFEKVFNEALN-SNAVCFID 536

Query: 557 FQTDPTENVWPMVQAGKGISEMLLGAED 584
            Q D  E+V PMV     +  ML+  ED
Sbjct: 537 VQVDRREDVLPMVPPNSPLKNMLVFKED 564


Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 878
Number of extensions: 33
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 565
Length adjustment: 36
Effective length of query: 549
Effective length of database: 529
Effective search space:   290421
Effective search space used:   290421
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)

Align candidate WP_007473040.1 CMTB2_RS00750 (acetolactate synthase large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.23781.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23781.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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