Alignments for a candidate for metE in Caminibacter mediatlanticus TB-2

Align 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Cobalamin-independent methionine synthase; Pollen allergen Sal k 3; SkMetE; Vitamin-B12-independent methionine synthase; Allergen Sal k 3.0101; EC 2.1.1.14 (characterized)
to candidate WP_007473510.1 CMTB2_RS01930 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase

Query= SwissProt::C1KEU0
         (757 letters)



>NCBI__GCF_000170735.1:WP_007473510.1
          Length = 752

 Score =  734 bits (1896), Expect = 0.0
 Identities = 386/762 (50%), Positives = 515/762 (67%), Gaps = 20/762 (2%)

Query: 1   MASHVVGYPRMGPKRELKFALESFWDGKSSAEDLKKVAADLRSSIWKQMADAGIKYIPSN 60
           MA++V+G+PR+G +RELK ALES+W GK + E+LK+ A++LR   W    +AGI  I  N
Sbjct: 1   MATYVIGFPRIGEQRELKKALESYWAGKINQEELKQTASELRKRHWIYQKNAGIDMISVN 60

Query: 61  TFAYYDQVLDTTAMLGAVPARYGFNGGEIGFDLYFSMARGNASLPAMEMTKWFDTNYHYI 120
            F++YD +LD T ML A+P +Y     +   D YF+MARG+A+  AMEMTKWF+TNYHYI
Sbjct: 61  DFSFYDNMLDMTVMLNAIPEKY--KDIDNCMDRYFAMARGDANHKAMEMTKWFNTNYHYI 118

Query: 121 VPELGPEVKFAYSSHKAVDEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVEKSFPLLSL 180
           VPEL   + F  +  K   EY EAK LG++    ++GP++Y+ LSK   G EK      +
Sbjct: 119 VPELDVNMGFKANIEKIKTEYNEAKELGINPKVNIIGPITYVKLSKIINGTEKE-----I 173

Query: 181 LPKILPVYKEVIAELKAAGAS-TIQFDEPTLVMDLESHQLKAFTDAYADLESTLSGLNVL 239
           + K++PVYK++I +LK    + TIQ DEP  V +  +  L+     Y +L +     N+ 
Sbjct: 174 IEKLIPVYKDIIHQLKELDENITIQMDEPYFVTNPTNEDLEILKKVYNELGNLA---NIY 230

Query: 240 VETYFADLTPEAYKTLVSLNGVTAFGFDLVRGTKTLDLIKSGFPSGKYLFAGVVDGRNIW 299
           V TYF + + EA + L     +     D V G++  + IKS   +GK +  G+V+GRN+W
Sbjct: 231 VATYF-EHSNEANEVLAK-TPIKGMFLDFVAGSE--NSIKSLVEAGKEVGIGIVNGRNVW 286

Query: 300 ANDLAASLATLQSLESIVGKDKLVVSTSCSLLHTAVDLVNETKLDDEIKSWLAFAAQKVL 359
            ND+  S A ++ L   +  +K+ + +SCSLLH    L  ETK+D++IKSW+++A +K+ 
Sbjct: 287 VNDIEKSAAFIKGLTEAIDNEKVHIGSSCSLLHVPYTLKYETKMDEDIKSWISYALEKLD 346

Query: 360 EVNALAKALAGQK----DEAFFSANAAALASRKSSPRVTNEAVQKAAAGLKGSDHRRATT 415
           E+  + K +  ++    D+     N  A+A+RK+S ++ +  VQ   + L   D  R+  
Sbjct: 347 EIRVINKLVKNEELSETDKEVLEGNKIAIATRKTSKKIHDPIVQDRVSNLTEKDKHRSMP 406

Query: 416 VSARLDAQQKKLNLPVLPTTTIGSFPQTVELRRVRREYKAKKISEEEYVKAIKEEISKVV 475
              R+  Q + L  P+LPTTTIGSFPQT ELR++RR+YK   I E  Y + IK+ I+  V
Sbjct: 407 FEERIKLQHENLKYPILPTTTIGSFPQTPELRKLRRDYKNGVIDETTYKEEIKKMIADCV 466

Query: 476 KLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRP 535
           K QEE+D+DVLVHGE ERNDMVEYFGEQL+G AF+ NGWVQSYGSRCVKPP+IYGDVSRP
Sbjct: 467 KFQEEIDLDVLVHGEFERNDMVEYFGEQLNGVAFSQNGWVQSYGSRCVKPPLIYGDVSRP 526

Query: 536 KAMTVFWSSLAQSMTSRPMKGMLTGPVTILNWSFVRNDQPRHETCYQIALAIEDEAEDLE 595
           K MTV W + AQS+T++PMKGMLTGPVT+LNWSFVR+DQ R  T YQ+ALAI DE E LE
Sbjct: 527 KDMTVEWITYAQSLTNKPMKGMLTGPVTMLNWSFVRDDQSRRTTAYQMALAIRDEVEALE 586

Query: 596 KAGINVIQIDEAALREGLPLRKSGHGFYLQWAVHSFRITNVGIQDTTQIHTHMCYSNFND 655
            AGI VIQ+DEAALREG PLR      Y  WA+ SFRIT   ++  TQIHTHMCYS F+D
Sbjct: 587 AAGIKVIQVDEAALREGYPLRNEKKAEYEDWAITSFRITTSIVKPETQIHTHMCYSEFSD 646

Query: 656 IIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEELADRI 715
           I+ +I DMDADVI+IEN+RSD  LL +F+E   Y   IGPGVYDIHSPRIP TEE+ D+I
Sbjct: 647 IMDAIEDMDADVISIENARSDNSLLKIFKER-GYKGEIGPGVYDIHSPRIPSTEEMVDQI 705

Query: 716 RKMLAVLESNVLWVNPDCGLKTRKYNEVNPALSNMVYAAKPI 757
            ++L VL +  +WVNPDCGLKTRK+ EV P+L NMV AAK +
Sbjct: 706 NQILEVLPAEKVWVNPDCGLKTRKWEEVKPSLKNMVEAAKKV 747


Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1414
Number of extensions: 65
Number of successful extensions: 8
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 757
Length of database: 752
Length adjustment: 40
Effective length of query: 717
Effective length of database: 712
Effective search space:   510504
Effective search space used:   510504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Align candidate WP_007473510.1 CMTB2_RS01930 (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase)
to HMM TIGR01371 (metE: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC 2.1.1.14))

Software error:

../bin/blast/fastacmd -i /tmp/list.10889.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10889.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.