Alignments for a candidate for dapB in Caminibacter mediatlanticus TB-2

Align 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) (characterized)
to candidate WP_007473655.1 CMTB2_RS02335 4-hydroxy-tetrahydrodipicolinate reductase

Query= reanno::Miya:8499684
         (259 letters)



>NCBI__GCF_000170735.1:WP_007473655.1
          Length = 253

 Score =  165 bits (417), Expect = 1e-45
 Identities = 101/253 (39%), Positives = 149/253 (58%), Gaps = 6/253 (2%)

Query: 7   VTGAGGRMGSTICRMAQEDPVLTLAAVVERPERLASLDVWKCPSGSDPDAVFATVPGGVV 66
           + GA GR+G  + ++ +E+    + AV+   ++  + D     +    DA        + 
Sbjct: 5   IVGATGRVGKLLVKILKEENE-KIGAVMFNGKQTINFDSDTIITN---DAEELLKNCDIA 60

Query: 67  VDFTSPEASMANARAAARAGVSHVIGTTGLTAEQKAELADLARTARIFWAPNMSIGVNVL 126
           +DF++P A+     AA +     VI TTGL   QK  + + ++   I +A NMS+G+ +L
Sbjct: 61  IDFSAPIATENLLEAAIKNPKPLVIATTGLNEHQKNLMIEASKKCPILYATNMSLGIAIL 120

Query: 127 LKILPQLVQQLGEQYDLEMVELHHNRKKDSPSGTALRLAECLAEARGWNLPDVANYHREG 186
            K++  + ++L + +D+E+ E HH  K D+PSGTAL LAE  A+ARG NL DV    R G
Sbjct: 121 NKLVAMVSEKLRD-FDIEITEQHHRYKVDAPSGTALTLAESCAKARGLNLKDVIVTGRSG 179

Query: 187 IIGERPKDEIGIQTIRGGDVVGVHTIYAMGPGERIEITHQAHSRENFAQGALRAAKWLPQ 246
            +G R KDEIG+  IRGGDVVG HT+     GE +E+ H A SRE FA+GA++ AKWL  
Sbjct: 180 HVGPRSKDEIGVFAIRGGDVVGRHTVGFYNDGEFLELHHTATSRETFARGAIKVAKWLIN 239

Query: 247 QQPGTLYSMLDML 259
           Q+PG LYS+ D L
Sbjct: 240 QKPG-LYSINDAL 251


Lambda     K      H
   0.318    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 150
Number of extensions: 10
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 253
Length adjustment: 24
Effective length of query: 235
Effective length of database: 229
Effective search space:    53815
Effective search space used:    53815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_007473655.1 CMTB2_RS02335 (4-hydroxy-tetrahydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.3676.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3676.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.