Alignments for a candidate for argI in Caminibacter mediatlanticus TB-2

Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_007473830.1 CMTB2_RS02700 ornithine carbamoyltransferase

Query= BRENDA::Q9PNU6
         (306 letters)



>NCBI__GCF_000170735.1:WP_007473830.1
          Length = 313

 Score =  328 bits (840), Expect = 1e-94
 Identities = 167/310 (53%), Positives = 225/310 (72%), Gaps = 8/310 (2%)

Query: 1   MKHFLTLRDFSKEEILSLVNHASELKKEPKK-----LLQDKTLAMIFEKNSTRTRMAFEL 55
           M+HFL+L D++KEEI  +++ A ++KKE K       L++  LAMIFEK+STRTR++FE+
Sbjct: 1   MRHFLSLIDYTKEEIKEIIDLAFQIKKETKNRIFKPYLKNYQLAMIFEKSSTRTRVSFEV 60

Query: 56  AITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFARYSKAPV 115
            I +LGG  +FLSS D+QL RGEP+KDTARVI  MVD +M+R    E L EFA+YSK PV
Sbjct: 61  GINQLGGNGIFLSSRDIQLGRGEPIKDTARVISRMVDMIMIRTFGQERLEEFAKYSKVPV 120

Query: 116 INALSELYHPTQVLGDLFTIKEWNKMQNGIAK---VAFIGDSNNMCNSWLITAAILGFEI 172
           IN L++  HP Q+L DL T+ E+ K      +   V +IGD NNM NSW+I A+ LGF +
Sbjct: 121 INGLTDKCHPVQLLADLMTMIEYKKFDFDNPQKTVVVYIGDGNNMANSWVILASKLGFNL 180

Query: 173 SIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKE 232
            +A PK Y+I  +I + A++ A  SGAKI   YD  EA+K+ DVV TDTWVSMG+E+EKE
Sbjct: 181 RVATPKGYEIDEDIKQKALEFAKQSGAKIEFLYDVKEAIKNADVVTTDTWVSMGQEDEKE 240

Query: 233 RKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEKHADVIFEEARNRLYVV 292
           ++I +F+GF ++ + M++A KDAI LHCLPAYRGYEVSEE+FEKH++ IF+EA NRL+  
Sbjct: 241 KRISDFKGFEVNSELMNLAKKDAIFLHCLPAYRGYEVSEEVFEKHSNEIFDEAENRLHAQ 300

Query: 293 KALLCFLDNQ 302
           K L+ +L  Q
Sbjct: 301 KGLMVWLMRQ 310


Lambda     K      H
   0.320    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 335
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 313
Length adjustment: 27
Effective length of query: 279
Effective length of database: 286
Effective search space:    79794
Effective search space used:    79794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_007473830.1 CMTB2_RS02700 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.14893.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14893.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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