Alignments for a candidate for lysA in Caminibacter mediatlanticus TB-2

Align Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 (characterized)
to candidate WP_007474124.1 CMTB2_RS03820 diaminopimelate decarboxylase

Query= SwissProt::B4XMC6
         (405 letters)



>NCBI__GCF_000170735.1:WP_007474124.1
          Length = 402

 Score =  456 bits (1173), Expect = e-133
 Identities = 225/392 (57%), Positives = 293/392 (74%)

Query: 3   NYEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLES 62
           N+ E  + + TP Y+YDF+  ++ +   K+AFK RKS+I YA+KANSNLS++   A L S
Sbjct: 2   NFLEFAKKYDTPLYVYDFNHFEKQYNELKQAFKARKSIIAYAIKANSNLSVIKKFASLGS 61

Query: 63  GADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETI 122
           GADCVSIGE++RAL AG+  Y+I+FSGVGK   EI++AL  +IL LNVES  ELK I+ I
Sbjct: 62  GADCVSIGEVKRALLAGVDKYKIIFSGVGKRDDEIKEALDKDILMLNVESEAELKRIDEI 121

Query: 123 AQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLEPVSV 182
           A+S+  +ARISIR+NP+ID KTHPYISTGL ENKFGV  + A +M++ AKKS  L P+ +
Sbjct: 122 AKSMNKEARISIRVNPDIDPKTHPYISTGLSENKFGVDIESAKKMYINAKKSKNLNPIGI 181

Query: 183 HFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYA 242
           HFHIGSQL +L PI EAS+ VA + +SL A+ +D++FFD+GGG+G+ Y++EETIK YDYA
Sbjct: 182 HFHIGSQLTELNPIKEASEIVANLVRSLKAINVDIKFFDIGGGLGIKYKDEETIKPYDYA 241

Query: 243 QGILNALQGLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLY 302
           Q IL+ L GLD+TIICEPGR +V   G  +T+VLYEK   +KRFVIVD  MND +RPSLY
Sbjct: 242 QAILSTLSGLDVTIICEPGRFLVGNGGWFLTKVLYEKVNGDKRFVIVDGAMNDLIRPSLY 301

Query: 303 HAKHAIRVITPSKGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSM 362
           +A H + VI+  K  +IS  ++VGPVCES D F KD  +P+  PGD I I   GAYG +M
Sbjct: 302 NAYHKVEVISSVKNPQISKANIVGPVCESGDFFAKDIEVPQTNPGDLIVIHSAGAYGFTM 361

Query: 363 ASQYNSRPKLLELALEDHKIRVIRKREALEDL 394
           +S YN+RP+  E+A+ED K RVIR+RE  EDL
Sbjct: 362 SSNYNTRPRPCEIAIEDGKDRVIRRRETFEDL 393


Lambda     K      H
   0.319    0.138    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 475
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 402
Length adjustment: 31
Effective length of query: 374
Effective length of database: 371
Effective search space:   138754
Effective search space used:   138754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_007474124.1 CMTB2_RS03820 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.7235.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.7235.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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