Alignments for a candidate for asp-kinase in Caminibacter mediatlanticus TB-2

Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate WP_007474201.1 CMTB2_RS04000 aspartate kinase

Query= SwissProt::Q88EI9
         (411 letters)



>NCBI__GCF_000170735.1:WP_007474201.1
          Length = 402

 Score =  441 bits (1135), Expect = e-128
 Identities = 228/403 (56%), Positives = 310/403 (76%), Gaps = 4/403 (0%)

Query: 3   LIVQKFGGTSVGSIERIEQVAEKVKKHREAGDDLVVVLSAMSGETNRLIDLAKQITDQPV 62
           L+VQKFGGTSVG ++RIE VA  VK ++E GDD+VVV+SAM+GETN+L+D A   +  P 
Sbjct: 2   LVVQKFGGTSVGDLDRIENVANIVKSYKERGDDVVVVVSAMAGETNKLLDYANHFSKTPP 61

Query: 63  PRELDVIVSTGEQVTIALLTMALIKRGVPAVSYTGNQVRILTDSSHNKARILQIDDQKIR 122
            RE+D++VS+GE+VT ALL++AL  +G+PA++ TG Q  I T S H KARI+ ID +K++
Sbjct: 62  QREVDLLVSSGERVTSALLSIALQSKGIPAIALTGRQAGIKTTSDHTKARIMDIDPEKMQ 121

Query: 123 ADLKEGRVVVVAGFQGVDEHGSITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYTTD 182
             LKEG+VV+VAGFQG++E+G +TTLGRGGSD T VA+A ALKAD+C+IYTDVDG+YTTD
Sbjct: 122 KHLKEGKVVIVAGFQGINENGDVTTLGRGGSDLTAVAIAGALKADKCEIYTDVDGIYTTD 181

Query: 183 PRVVPQARRLEKITFEEMLEMASLGSKVLQIRSVEFAGKYNVPLRVLHSFK-EGPGTLIT 241
           PR+ P+A++++ I+++EMLE+ASLG+KV+Q RSVE A K NV + V  SFK E  GTLIT
Sbjct: 182 PRIEPKAKKIDVISYDEMLELASLGAKVMQSRSVELAKKLNVDIEVKSSFKPEIKGTLIT 241

Query: 242 IDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISASNIEVDMIVQNVAHD 301
             E + ME+ ++SGIA ++++A+++I GV D PG++ +I   ++  NI VDMIVQNV  D
Sbjct: 242 -KESKDMEKVLVSGIALDKNQARVSIFGVDDRPGISAEIFEKLANKNINVDMIVQNVGKD 300

Query: 302 NTTDFTFTVHRNEYEKAQSVLENTAREIGAREVIGDTKIAKVSIVGVGMRSHAGVASCMF 361
              + TFTV + E E  + VL+    E     +  DT IAKVS+VGVGM+SH+GVA+  F
Sbjct: 301 GKANLTFTVPQTEVELTKEVLKE--YENNTENIEYDTDIAKVSVVGVGMKSHSGVAAKAF 358

Query: 362 EALAKESINIQMISTSEIKVSVVLEEKYLELAVRALHTAFDLD 404
           + LA E+INI MISTSEIK+S+V++EKY ELAVRALH A++LD
Sbjct: 359 KTLANENINILMISTSEIKISMVIDEKYGELAVRALHKAYELD 401


Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 437
Number of extensions: 12
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 402
Length adjustment: 31
Effective length of query: 380
Effective length of database: 371
Effective search space:   140980
Effective search space used:   140980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_007474201.1 CMTB2_RS04000 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.31463.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31463.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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