Alignments for a candidate for ilvE in Caminibacter mediatlanticus TB-2

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_007474688.1 CMTB2_RS05655 branched-chain amino acid transaminase

Query= reanno::BFirm:BPHYT_RS16285
         (307 letters)



>NCBI__GCF_000170735.1:WP_007474688.1
          Length = 304

 Score =  340 bits (871), Expect = 3e-98
 Identities = 169/299 (56%), Positives = 223/299 (74%), Gaps = 2/299 (0%)

Query: 10  IWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHTKRLLNSAKI 69
           IWMDG+ I W +AK+HVLTHTLHYG GVFEG RAY+T + G AIFRL++HTKRLLNSAKI
Sbjct: 7   IWMDGEFIPWSEAKVHVLTHTLHYGNGVFEGTRAYQT-ENGLAIFRLEDHTKRLLNSAKI 65

Query: 70  FQMDVPFDHETLAAAQCEVVRENKLE-SCYLRPIIWVGSEKLGVSAKGNTIHVAIAAWPW 128
            ++DVPF    L  AQ E++R+N  + + Y+RP+I++G  K+G+   G  +HV+IAAW W
Sbjct: 66  LKIDVPFSQNELEKAQIELLRKNDFKGNVYIRPLIFLGYGKMGLYHIGAPVHVSIAAWEW 125

Query: 129 GAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADGYDEALLLD 188
           GAYLGE+G+ KGIRVK SS  R+ V  +  +AKA   Y+NS +A  EAI  GY+EAL+LD
Sbjct: 126 GAYLGEEGLEKGIRVKISSIVRNPVKSTFGKAKAVANYLNSQMAKYEAIECGYEEALMLD 185

Query: 189 VDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEKRITRDEVY 248
            DG+V+EGSGE FF+V +G L TP   + L+ IT+ T++ LA++  I +  +RITRDEVY
Sbjct: 186 DDGFVAEGSGECFFIVRDGVLITPPNDNSLESITQATILELAKERDIPIERRRITRDEVY 245

Query: 249 TCDEAFFTGTAAEVTPIRELDNRTIGSGARGPITEKLQSGFFDIVNGKSDKYANWLTKI 307
             DEAFFTGTAAEVTP+RE+D R IG+G RG IT++LQ  +FD+V G+   Y ++LT I
Sbjct: 246 ISDEAFFTGTAAEVTPVREVDGRVIGNGKRGEITKELQDAYFDVVYGRDKGYKHYLTYI 304


Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 348
Number of extensions: 15
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 304
Length adjustment: 27
Effective length of query: 280
Effective length of database: 277
Effective search space:    77560
Effective search space used:    77560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_007474688.1 CMTB2_RS05655 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.21571.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21571.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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