Alignments for a candidate for hisI in Caminibacter mediatlanticus TB-2

Align putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) (characterized)
to candidate WP_007474690.1 CMTB2_RS05665 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE

Query= metacyc::HISTCYCLOPRATPPHOS
         (203 letters)



>NCBI__GCF_000170735.1:WP_007474690.1
          Length = 220

 Score =  154 bits (390), Expect = 9e-43
 Identities = 80/204 (39%), Positives = 119/204 (58%), Gaps = 12/204 (5%)

Query: 10  LDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDKTLESGKVTFFSRTKQRLWTKGETSG 69
           +D+EK  GL+PVIVQ   + EVLML YMN EAL+ T ++G   FFSR++ ++W KGE+SG
Sbjct: 2   VDFEKNGGLVPVIVQDIDTNEVLMLAYMNKEALELTKKTGLAHFFSRSRNKIWQKGESSG 61

Query: 70  NFLNVVSIAPDCDNDTLLVLANPIGPTCHKGTSSCF------------GDTAHQWLFLYQ 117
           N   V  I  DCDNDT+L+     G  CH G  SCF             +   ++ F+ +
Sbjct: 62  NIQEVKDILVDCDNDTILLKVKQKGVACHTGRKSCFFTKLDTNEVILDKEKEIEYNFIDK 121

Query: 118 LEQLLAERKSADPETSYTAKLYASGTKRIAQKVGEEGVETALAATVHDRFELTNEASDLM 177
           L   L +RK+ADP+TSY + LY  G   + +K+ EE  E   A   +++ E+  EA+DL 
Sbjct: 122 LYHTLLDRKNADPKTSYVSSLYNKGENSLLKKIAEEAAEFCFAVKDNNKNEIIYEAADLA 181

Query: 178 YHLLVLLQDQGLDLTTVIENLRKR 201
           +H L+ L  + +    ++E L++R
Sbjct: 182 FHTLIALAYKNIHPEAILEELKRR 205


Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 123
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 220
Length adjustment: 21
Effective length of query: 182
Effective length of database: 199
Effective search space:    36218
Effective search space used:    36218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)

Align candidate WP_007474690.1 CMTB2_RS05665 (bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE)
to HMM TIGR03188 (hisE: phosphoribosyl-ATP diphosphatase (EC 3.6.1.31))

Software error:

../bin/blast/fastacmd -i /tmp/list.13172.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.13172.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.