Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_007474971.1 CMTB2_RS06680 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000170735.1:WP_007474971.1
Length = 1090
Score = 1153 bits (2982), Expect = 0.0
Identities = 611/1083 (56%), Positives = 773/1083 (71%), Gaps = 41/1083 (3%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKR DIK+IL++G+GPIVIGQACEFDYSG QA K L+ GYRV+LVNSNPATIMTDPE
Sbjct: 1 MPKREDIKTILLIGSGPIVIGQACEFDYSGVQAAKTLKSLGYRVVLVNSNPATIMTDPEF 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
ADATYIEPI EV+ KII+KE+ DA+LPTMGGQTALN A+E+ +G+L+ GV +GA
Sbjct: 61 ADATYIEPITPEVISKIIKKEKVDAILPTMGGQTALNVAMEMYDKGMLK--GVEFLGANP 118
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
+AI K EDR F AM+KIG++ +S A+ +E+A+ + ++GFP I+R +FT+GG G G
Sbjct: 119 EAIKKGEDREAFKKAMEKIGMDLPKSATANNLEDAIKIVEEIGFPVIVRAAFTLGGLGSG 178
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
+AYN +EF+E+ G++ SP E+ I ES++GWKEYEMEV+RDK DNCIIVCSIENFD M
Sbjct: 179 VAYNMDEFKELAKTGIESSPINEIEIMESMLGWKEYEMEVIRDKEDNCIIVCSIENFDPM 238
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPA TLTDKEYQ MR+AS +LREIGV+TGGSNVQFAVNPKNGR+IVIEM
Sbjct: 239 GVHTGDSITVAPALTLTDKEYQRMRDASFKILREIGVDTGGSNVQFAVNPKNGRMIVIEM 298
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATG+PIAKVA LAVG+TLDE+ ND+T T ASFEP IDY+VTKIP
Sbjct: 299 NPRVSRSSALASKATGYPIAKVATLLAVGFTLDEIKNDMTN--TAASFEPVIDYIVTKIP 356
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420
RF FEKF A+ LTT MKSVGEVMAIGR +ES+QKAL LE G GF+ + D E
Sbjct: 357 RFTFEKFPSADSTLTTSMKSVGEVMAIGRIFKESIQKALCSLETGLDGFERRDC--DEET 414
Query: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480
L +R+L+ +RI YIA+AFR G SV+ ++ LT ID+WFL QI+E+V E+ E+
Sbjct: 415 L---KRKLRIPNDERILYIAEAFRRGYSVEDLYELTMIDKWFLNQIKEIVDFEK---EID 468
Query: 481 ITGLNADF-LRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATD 539
I LN + LR+ K GF+D +AKL GV E ++ R + + Y VDTCAAEF T
Sbjct: 469 IEILNDEVKLRKAKTYGFSDRMIAKLIGVSENDVYNARKRLKVEIDYNEVDTCAAEFETK 528
Query: 540 TAYMYS----TYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYE 595
T Y+YS T + + +K ++LGGGPNRIGQGIEFDYCCVHA+ AL + G +
Sbjct: 529 TNYLYSSVNVTKNVPLRESSLKNDKKALILGGGPNRIGQGIEFDYCCVHAAFALNDLGVK 588
Query: 596 TIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALE 655
TIM NCNPETVSTDYDTSD LYFEP+ E V ++ +E P GVIVQ+GGQTPLKLA+ L
Sbjct: 589 TIMYNCNPETVSTDYDTSDVLYFEPINFERVRNVIDLESPDGVIVQFGGQTPLKLAKPLT 648
Query: 656 AAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVR 715
+ G +IGTS ID AEDRE+F ++ L L QP N T E A + A +IGYP++VR
Sbjct: 649 SIGAKIIGTSAKVIDTAEDREKFAEFIKDLGLNQPENGTAFTKEEAYKIADKIGYPVLVR 708
Query: 716 PSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLI 775
PSYVLGGRAM IVY+E +L+ Y AVSVSN++PVL+D FLD A+E+DVDAI D + V I
Sbjct: 709 PSYVLGGRAMRIVYNENELKEYMDEAVSVSNESPVLIDKFLDRAIELDVDAISDTKNVYI 768
Query: 776 GGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNN 835
GGIM+HIE+AG+HSGDSACSLP ++S+E + +++A +L V+GL+N+Q+A+ +
Sbjct: 769 GGIMQHIEEAGIHSGDSACSLPNVSISEEKIKEIENVTKQIALKLGVKGLLNIQYALHKD 828
Query: 836 EVYLIEVNPRAARTVPFVSKATGVPLAKVAARVM----------AGKSLAEQ-------- 877
++YLIEVNPRA+RTVPFVSKATG+P+AKVA RVM GK L E
Sbjct: 829 KLYLIEVNPRASRTVPFVSKATGLPMAKVATRVMWNLAYNPEINNGKVLEEALKFYDKFN 888
Query: 878 ------GVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKA 931
V K + +VKE V PFNK PG D +LGPEM+STGEVMG+ +F E+FAKA
Sbjct: 889 VVEFDGNVYKPKQKGHIAVKEAVFPFNKLPGADLILGPEMKSTGEVMGISESFGESFAKA 948
Query: 932 QLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLV 991
Q + + + G+ +S+ DKE +A + GF++ AT GT V+ EAGI V
Sbjct: 949 QFAAKNILPTKGKVFISLTNLDKEFAPTIAKAFKQLGFDIVATSGTYKVIVEAGIECEKV 1008
Query: 992 NKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATA 1051
K+ EGRP+I D IKN E +INT+ + + +D+++IRR L V Y TT+ A
Sbjct: 1009 LKISEGRPNIVDMIKNEEIALVINTSDNKASKDDAKIIRREVLNNGVPYFTTIAAAKAAI 1068
Query: 1052 MAL 1054
A+
Sbjct: 1069 EAI 1071
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3038
Number of extensions: 141
Number of successful extensions: 17
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1090
Length adjustment: 46
Effective length of query: 1027
Effective length of database: 1044
Effective search space: 1072188
Effective search space used: 1072188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_007474971.1 CMTB2_RS06680 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.17285.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17285.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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