Alignments for a candidate for trpA in Caminibacter mediatlanticus TB-2

Align tryptophan synthase subunit α (EC 4.1.2.8) (characterized)
to candidate WP_007475328.1 CMTB2_RS07715 tryptophan synthase subunit alpha

Query= metacyc::MONOMER-3561
         (251 letters)



>NCBI__GCF_000170735.1:WP_007475328.1
          Length = 240

 Score =  114 bits (286), Expect = 1e-30
 Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 12/234 (5%)

Query: 7   LIPYLTAGDPSVEKTLEFLLAVEEFA-GLIELGIPFSDPMADGKTIQESHYRALRNGFKL 65
           LI Y+T   P  E T++ + +++E     IELGIPFSDP+ADG+ IQE + RAL+NG+K+
Sbjct: 4   LIAYITTAYPDKEFTIDLIHSLKENGVDGIELGIPFSDPVADGEIIQEVNKRALQNGYKI 63

Query: 66  DDTFRILREFRRHSSTPVILMTYYNPVFRTGVKKFLGEAKASGADGILVVDLPVSHAGEF 125
           +DTF +  +      T    M Y+N  +  G    + +AK     G ++ DLP   A E+
Sbjct: 64  NDTFYVSEKTGNIIDT--YWMGYFNNFYHKGYNFMIEKAKEYNIKGFIIPDLPYEEAIEY 121

Query: 126 LDAAKEEGLKTVFLAAPNTPDERLREIDKASTGFVYLISLYGTTGARDRLPETAFEFVRR 185
                E     +   AP    ER++ I +    F+YL++  G TG+  +  E     ++ 
Sbjct: 122 -----ENKFPLISFVAPTDSLERIKTILQNPKEFIYLVAYAGITGSDKK--EDLSNIIKY 174

Query: 186 ARKICNNKLAVGFGVSRREQVEELLKAGADGVVVGSALIELISRSENPVEELRR 239
            ++I +  L +GFGV+     E+      DGV+VGS  ++++    +  E++++
Sbjct: 175 IKEIISTPLYIGFGVNENTAREK--AKNVDGVIVGSTFVKVLLEDISNTEKIKK 226


Lambda     K      H
   0.319    0.138    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 176
Number of extensions: 11
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 240
Length adjustment: 24
Effective length of query: 227
Effective length of database: 216
Effective search space:    49032
Effective search space used:    49032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate WP_007475328.1 CMTB2_RS07715 (tryptophan synthase subunit alpha)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.22045.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22045.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.