Alignments for a candidate for trpD_1 in Caminibacter mediatlanticus TB-2

Align Anthranilate synthase component 2; AS; ASII; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component; EC 4.1.3.27 (characterized)
to candidate WP_007475378.1 CMTB2_RS07850 aminodeoxychorismate/anthranilate synthase component II

Query= SwissProt::P00901
         (198 letters)



>NCBI__GCF_000170735.1:WP_007475378.1
          Length = 187

 Score =  206 bits (523), Expect = 3e-58
 Identities = 107/193 (55%), Positives = 141/193 (73%), Gaps = 9/193 (4%)

Query: 2   LLMMIDNYDSFTYNVVQYLGELGAEVKVIRNDEMTIAQIEALNPERIVVSPGPCTPSEAG 61
           +++MIDNYDSFTYN+VQY  ELGA +KVIRNDEM+I +I+ LNPE+I++SPGP TP EAG
Sbjct: 1   MILMIDNYDSFTYNIVQYCLELGANLKVIRNDEMSIEEIKKLNPEKIIISPGPSTPKEAG 60

Query: 62  VSIEAILHFAGKLPILGVCLGHQSIGQAFGGDVVRARQVMHGKTS--PVHHRDLGVFTGL 119
           VS+E +     + PILGVCLGHQSI  AFGG+++RA+ +MHGKTS   V  +D  ++  L
Sbjct: 61  VSVEVVKKI--QKPILGVCLGHQSIAYAFGGEIIRAKNLMHGKTSNIEVTLKD-DIYKNL 117

Query: 120 NNPLTVTRYHSLVVKRETLPDCLEVTAWTAHEDGSVDEIMGLRHKTLNIEGVQFHPESIL 179
            N   VTRYHSL+V ++ LP  +  T+++  +    +EIM LR K   I GVQFHPESI+
Sbjct: 118 PNKFRVTRYHSLIVNKKNLPKNIIPTSFSIDD----EEIMSLRVKDKPIYGVQFHPESIM 173

Query: 180 TEQGHELFANFLK 192
           +E G E+  NFLK
Sbjct: 174 SEYGKEIINNFLK 186


Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 139
Number of extensions: 6
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 187
Length adjustment: 20
Effective length of query: 178
Effective length of database: 167
Effective search space:    29726
Effective search space used:    29726
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 44 (21.6 bits)

Align candidate WP_007475378.1 CMTB2_RS07850 (aminodeoxychorismate/anthranilate synthase component II)
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.26650.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26650.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.