Alignments for a candidate for ilvE in Rhodanobacter denitrificans FW104-10B01

Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_007509412.1 LRK54_RS12020 branched-chain amino acid transaminase

Query= reanno::Dyella79:N515DRAFT_2015
         (305 letters)



>NCBI__GCF_021560695.1:WP_007509412.1
          Length = 305

 Score =  559 bits (1441), Expect = e-164
 Identities = 266/305 (87%), Positives = 293/305 (96%)

Query: 1   MAQQYPEWIWQNGQIKPWREATTHVMSHALHYGSSVFEGIRSYATPDGAAIFRLTDHLKR 60
           MAQQYPEWIWQNG IKPW EATTHVMSHALHYGSSVFEGIRSY TPDGAAIFRLTDHL R
Sbjct: 1   MAQQYPEWIWQNGSIKPWAEATTHVMSHALHYGSSVFEGIRSYVTPDGAAIFRLTDHLNR 60

Query: 61  LYQSAKIYDMVLPYSQDQIAAACRDVIKQNGLGAAYLRPVAYRGLGGFGLSAETPIDVAV 120
           LY SAKIYDM LPY+ D++AAACR+VI++NGLGA+YLRPVA+RGLGGFGLSAETPID+AV
Sbjct: 61  LYMSAKIYDMALPYTVDELAAACREVIRRNGLGASYLRPVAWRGLGGFGLSAETPIDMAV 120

Query: 121 AAWPMGPYLGPEALESGIDACVSSWQRFAPNTIPAGAKAGGNYLSGQLIAREARRLGFGE 180
           AAWPMGPYLG EAL++GIDACVSSWQRFAPNTIPAGAKAGGNYLSGQLIAREARRLGFGE
Sbjct: 121 AAWPMGPYLGAEALQNGIDACVSSWQRFAPNTIPAGAKAGGNYLSGQLIAREARRLGFGE 180

Query: 181 GIALANTGLLSEGAGENLFLVFDGVLHTTPASASILTGITRHTLITLAREDGIEVIERDI 240
           GIALA+TGLLSEGAGENLFLVFDGVLHT PASAS+LTGITR+TL+TLAREDGIEV+ERDI
Sbjct: 181 GIALASTGLLSEGAGENLFLVFDGVLHTPPASASLLTGITRNTLMTLAREDGIEVVERDI 240

Query: 241 PREYLYLCDELLMCGTAAEITPIRSVDGKKIGSGKAGRVTRRMQELFFGLFNGKTNDQWG 300
           PREYLYL +E+LMCGTAAEITPIRS+DGK++G+GKAGRVT R+QELFFGLF+G+T+D+WG
Sbjct: 241 PREYLYLAEEVLMCGTAAEITPIRSIDGKQVGTGKAGRVTLRLQELFFGLFDGRTHDKWG 300

Query: 301 WLEPV 305
           WLE V
Sbjct: 301 WLEQV 305


Lambda     K      H
   0.320    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 468
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 305
Length adjustment: 27
Effective length of query: 278
Effective length of database: 278
Effective search space:    77284
Effective search space used:    77284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_007509412.1 LRK54_RS12020 (branched-chain amino acid transaminase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.5198.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5198.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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