Alignments for a candidate for thrB in Halococcus hamelinensis 100A6

Align Homoserine kinase; HK; HSK; EC 2.7.1.39 (characterized)
to candidate WP_007691078.1 C447_RS03725 homoserine kinase

Query= SwissProt::Q6M0H5
         (301 letters)



>NCBI__GCF_000336675.1:WP_007691078.1
          Length = 291

 Score =  195 bits (496), Expect = 9e-55
 Identities = 111/259 (42%), Positives = 158/259 (61%), Gaps = 12/259 (4%)

Query: 6   VCSPGTSANLGPGYDIFGLALSNPYDIVEVEKTENGITISVEGEKAEEIPTNVDENTAGV 65
           V +P TSANLG G+D+FG+ALS P DIV V K +   TI V G  +E IP + ++NT G 
Sbjct: 4   VRAPATSANLGSGFDVFGVALSRPADIVRVSKADE-TTIEVTGTGSEYIPEDPEKNTVGA 62

Query: 66  VAKKMIEDFKIESGIHIHIIKGIKPGSGLGSSSASCAGIAFALNELFELKLSKLELVKYS 125
           VA+ +      ++  HI I KGI+P SGLGSS+AS A  A  L +L++   ++ ELV  +
Sbjct: 63  VAEAL------DAPAHIEIDKGIRPASGLGSSAASAAAAAVGLRDLYDRDYTREELVPIA 116

Query: 126 SLGEAVAAGAPHADNVAPAIFGGFTLTTSYEPLEVLHIPVDLEVLVALPNIQVSTKTARE 185
           + GEAV +G  HADNVAP+I GGFT+ T   P  +  +   + ++  LP   VST+ AR 
Sbjct: 117 AEGEAVVSGEAHADNVAPSILGGFTVAT---PDGITQVDTSIPLVACLPETVVSTRDARR 173

Query: 186 ILPKEIPIKDMVNNVGKAAGMVYALYNNDLDLFGRYMSKDCVVEPCRANLIDGYTEVKEK 245
           ++P  + + D+V  VG AA +   +   D +L GR M+ D +V P RA LIDGY  V   
Sbjct: 174 VVPDRVDMNDVVETVGNAASLTVGMCRGDPELVGRGMA-DPMVTPARAELIDGYDAVCLA 232

Query: 246 VKDM-VYGITISGSGPAII 263
            ++    G+T+SG+GP +I
Sbjct: 233 AREAGATGVTVSGAGPTVI 251


Lambda     K      H
   0.315    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 197
Number of extensions: 10
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 291
Length adjustment: 26
Effective length of query: 275
Effective length of database: 265
Effective search space:    72875
Effective search space used:    72875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate WP_007691078.1 C447_RS03725 (homoserine kinase)
to HMM TIGR00191 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.6037.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6037.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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