Align dihydroxyacid dehydratase (EC 4.2.1.9) (characterized)
to candidate WP_009543544.1 CCE_RS20700 dihydroxy-acid dehydratase
Query= metacyc::MONOMER-18815
(557 letters)
>NCBI__GCF_000017845.1:WP_009543544.1
Length = 561
Score = 766 bits (1977), Expect = 0.0
Identities = 377/557 (67%), Positives = 460/557 (82%)
Query: 1 MAFNKRSQNITQGVARSPNRSMYYALGYKKEDFDKPMVGIANGHSTITPCNAGLQRLADA 60
M+ N RS+ +TQG R+PNR+M A+G+ +DF+KP+VG+ANG STITPCN G+ LA
Sbjct: 1 MSENLRSRAVTQGSQRTPNRAMLRAVGFGDDDFNKPIVGVANGFSTITPCNMGINDLAKR 60
Query: 61 AIDAIKASDANPQVFGTPTISDGMSMGTEGMKYSLISREVIADCIETAAQGQWMDGVVVI 120
A IK++ PQ+FGT TISDG+SMGTEGMKYSL+SR+VIAD IETA GQ MDGV+ I
Sbjct: 61 AEAGIKSAGGMPQMFGTITISDGISMGTEGMKYSLVSRDVIADSIETACNGQSMDGVIAI 120
Query: 121 GGCDKNMPGGMIALARTNVPGIYVYGGTIKPGNWKGKDLTIVSSFEAVGEFTAGRMSQED 180
GGCDKNMPG MIA+AR N+P I+VYGGTIKPG++ G+DLT+VS+FEAVG+ +AG++
Sbjct: 121 GGCDKNMPGAMIAMARMNIPAIFVYGGTIKPGHYNGEDLTVVSAFEAVGQHSAGKIDDNT 180
Query: 181 FEGVEKNACPSTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV 240
+E+NACP GSCGGM+TANTMSS+FE +GMSL YSSTMA D EK DS +SA VLV
Sbjct: 181 LLAIERNACPGAGSCGGMFTANTMSSAFEVMGMSLPYSSTMAAEDAEKADSTEKSAFVLV 240
Query: 241 EAIKQDIKPRDIITRKSIENAVALIMATGGSTNAVLHYLAIAHAAEVEWTIDDFERIRRK 300
AI+ I PR I+TRK+ ENAV++IMA GGSTNAVLH LAIA+ V+ T+DDFE IR++
Sbjct: 241 NAIRNQILPRQILTRKAFENAVSVIMAVGGSTNAVLHLLAIANTIGVDLTLDDFETIRQR 300
Query: 301 VPVICNLKPSGQYVATDLHKAGGIPQVMKILLKAGMLHGDCLTITGRTLAEELENVPDTP 360
VPV+C+LKPSG+YV +LH+AGGIPQVMK+LL G+LHGD LTI+G+T+AE L +VPD P
Sbjct: 301 VPVLCDLKPSGRYVTVNLHQAGGIPQVMKMLLNHGLLHGDALTISGQTIAEILADVPDEP 360
Query: 361 RADQDVILPIEKALYAEGHLAILKGNLAEEGAVAKITGLKNPVITGPARVFEDEQSAMEA 420
A+QDVI + +Y EGHLAILKGNLA EGAVAKI+G+KNP ITGPARVFE E+ +EA
Sbjct: 361 PANQDVIRSWDNPVYKEGHLAILKGNLASEGAVAKISGVKNPQITGPARVFESEEECLEA 420
Query: 421 ILADKINAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMV 480
ILA KINAGD++++RY GP+GGPGM EMLAPTSAIIG GLG+SVG ITDGRFSGGT+G+V
Sbjct: 421 ILAGKINAGDVIIVRYEGPRGGPGMREMLAPTSAIIGAGLGDSVGLITDGRFSGGTYGLV 480
Query: 481 VGHVAPEAYVGGTIALVQEGDSITIDAHKLLLQLNVADEELARRRANWKQPAPRYTRGVL 540
VGHVAPEAYVGGTI LV+EGDSITIDA K LLQ+NV++EEL++RRANWK P PRY RGVL
Sbjct: 481 VGHVAPEAYVGGTIGLVEEGDSITIDAKKKLLQVNVSEEELSQRRANWKAPEPRYQRGVL 540
Query: 541 AKFSKLASTASKGAVTD 557
K++KL S++S GAVTD
Sbjct: 541 GKYAKLVSSSSLGAVTD 557
Lambda K H
0.316 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1032
Number of extensions: 42
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 561
Length adjustment: 36
Effective length of query: 521
Effective length of database: 525
Effective search space: 273525
Effective search space used: 273525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)
Align candidate WP_009543544.1 CCE_RS20700 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.6802.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6802.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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