Alignments for a candidate for trpA in Crocosphaera subtropica ATCC 51142

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate WP_009546882.1 CCE_RS10105 tryptophan synthase subunit alpha

Query= uniprot:M4NLA4
         (266 letters)



>NCBI__GCF_000017845.1:WP_009546882.1
          Length = 264

 Score =  177 bits (449), Expect = 2e-49
 Identities = 105/249 (42%), Positives = 145/249 (58%), Gaps = 11/249 (4%)

Query: 1   MSRIDRRFAALKAANRTGLIPFVTAGDPSPEHMVALMHALVDAGADLIELGVPFSDPMAD 60
           M+ +   F +L+   + GLIPF+TAGDP  E     +  L  +GADLIELGVP+SDP+AD
Sbjct: 1   MTSVSECFQSLRDRKQCGLIPFITAGDPDLETTAKALRVLDASGADLIELGVPYSDPLAD 60

Query: 61  GPVIQHASERAIAKGVGLADVLGWVAAFRQHDADTPIVLMGYLNPIETHGYARFAGEAVQ 120
           GPVIQ A+ RA+ +GV L DVL  V    Q D   PI+L  Y NPI   G   F  +   
Sbjct: 61  GPVIQAAASRALRRGVKLEDVLNIVKGV-QGDIKAPIILFSYYNPIFYRGIEAFLEQIKS 119

Query: 121 AGVDGVLLVDCPLEES-AVLQPLRDAGLQRILLAAPTTEPSRMAQLCGSAEGFLYYVSFA 179
           AGV G+++ D PLEE+  +L+P  + G++  LL APT+   R+  +   ++GF+Y VS  
Sbjct: 120 AGVKGLVVPDLPLEEAETLLKPAAEMGIEVTLLVAPTSPIERIKAIAHQSQGFIYLVSVT 179

Query: 180 GITGAAHLSTGDIAARVAD----VRARAKAPVAVGFGIRDAASAKAIAGF-ADAVVIGSA 234
           G+TG        +A RV D    +R     P+ VGFGI +   A  +  + +DAV++GSA
Sbjct: 180 GVTG----MRTQVATRVEDLLKSLRNTTDKPIGVGFGISEPEHALQVKNWGSDAVIVGSA 235

Query: 235 LVDRLAGAT 243
            V RLA  T
Sbjct: 236 CVKRLAQGT 244


Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 214
Number of extensions: 11
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 264
Length adjustment: 25
Effective length of query: 241
Effective length of database: 239
Effective search space:    57599
Effective search space used:    57599
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_009546882.1 CCE_RS10105 (tryptophan synthase subunit alpha)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.24449.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24449.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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