Alignments for a candidate for ilvA in Cereibacter sphaeroides ATCC 17029

Align threonine deaminase (EC 4.3.1.19) (characterized)
to candidate WP_009563248.1 RSPH17029_RS14480 threonine ammonia-lyase IlvA

Query= reanno::Pedo557:CA265_RS15860
         (416 letters)



>NCBI__GCF_000015985.1:WP_009563248.1
          Length = 415

 Score =  389 bits (998), Expect = e-112
 Identities = 205/409 (50%), Positives = 281/409 (68%), Gaps = 6/409 (1%)

Query: 12  QSASQRLKGVVKRTPLEFNAGLSAHYNANIYLKREDLQIVRSYKLRGAYNKISSLPQDAL 71
           ++A++ L+ +   TPL+ N  LSA Y A+I+LKREDL  VRSYKLRGA+  +  + +DA 
Sbjct: 9   RAATRALRDLFPETPLQRNDHLSARYGADIWLKREDLTPVRSYKLRGAFTAMRKV-RDAR 67

Query: 72  IN--GVVCASAGNHAQGVAYSCKKLGIKGVIFMPEITPKQKVKQTYMFGGDNVEVVLVGD 129
            +    VCASAGNHAQGVAY+C+  G+KG IFMP  TP+QK+ +T  FGG+ VE+VL GD
Sbjct: 68  PDQRSFVCASAGNHAQGVAYACRHFGVKGTIFMPVTTPQQKIAKTRTFGGEAVEIVLTGD 127

Query: 130 TFDDCLKEALAYSAEKSATFIPPFDDEKVIEGQATVGVEIYEDLPDL-DMIVMPVGGGGL 188
            FD  L  A A+ AE+ A F+ PFDD  VIEGQA+VGVE+ E L    D++V+PVGGGGL
Sbjct: 128 YFDQTLAAAQAWCAEQKAHFLAPFDDPDVIEGQASVGVELLEQLGRAPDLVVLPVGGGGL 187

Query: 189 ASGVSAYMKTVKPEVKLVGVEPLGAPSMVTAMEYGGPFTLEEIDRFVDGAAVKRIGHITY 248
           ASGV+A++++  PE     VEP G  S++ A+E GGP  L  ++ FVDGAAV R+G + +
Sbjct: 188 ASGVTAFLRSEAPETDFRFVEPAGGASLLAALEAGGPTALPRVNSFVDGAAVARLGQLPF 247

Query: 249 EYCKELL-DQMHLIPEGKICTTILKLYNEDAIVVEPAGALSVAALDQLKDQITGKTVVCI 307
                +  DQ+HL PE +IC T+L++ N + IV+EPAGALSV  L +L D+I G+TVVC+
Sbjct: 248 SMLDWVRPDQVHLAPEDRICITMLEMLNVEGIVLEPAGALSVDVLPELADRIRGRTVVCV 307

Query: 308 VSGGNNDIERMQEIKEKSLLFEGLKHYFIVRFPQRPGALKLFVNEVLGPQDDITRFEFIK 367
            SGGN D ER+ E+KE++  + GLK YFI+R PQRPGAL+ F+  +LGP DDI RFE++K
Sbjct: 308 TSGGNFDFERLPEVKERAQRYSGLKKYFILRMPQRPGALREFL-MMLGPDDDIARFEYLK 366

Query: 368 KTNKENGPALVGIELSNKNDYASLLQRMKDFKFEIIELNQDQTLFEYLV 416
           K+ +  G  L+GIE     ++A L   M++      ++  D  L E+LV
Sbjct: 367 KSARNFGSVLIGIETREAGNFARLTAVMEEAGLNYRDITGDDALAEFLV 415


Lambda     K      H
   0.318    0.138    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 476
Number of extensions: 16
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 415
Length adjustment: 31
Effective length of query: 385
Effective length of database: 384
Effective search space:   147840
Effective search space used:   147840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_009563248.1 RSPH17029_RS14480 (threonine ammonia-lyase IlvA)
to HMM TIGR02079 (ilvA: threonine dehydratase (EC 4.3.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.23392.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.23392.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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