Alignments for a candidate for hisA in Cereibacter sphaeroides ATCC 17029

Align 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate WP_009566362.1 RSPH17029_RS04675 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase

Query= reanno::azobra:AZOBR_RS01680
         (249 letters)



>NCBI__GCF_000015985.1:WP_009566362.1
          Length = 239

 Score =  307 bits (787), Expect = 1e-88
 Identities = 161/240 (67%), Positives = 186/240 (77%), Gaps = 4/240 (1%)

Query: 1   MIIYPAIDLKDGACVRLLRGEMSQATVFNTEPADQARLFESQGFEWLHLVDLNGAFEGKP 60
           MI+YPAIDLKDG CVRLLRGEM  ATVF  +PA QA  FE+ G EW+HLVDLNGAF G+P
Sbjct: 1   MILYPAIDLKDGQCVRLLRGEMEAATVFGDDPAAQAAAFEAAGCEWVHLVDLNGAFAGRP 60

Query: 61  VNGKAVESILGAVAIPVQLGGGIRDLKTIAHWLEKGVSRVILGTVALREPELVREACREF 120
           VN  AVE+IL  +A+P QLGGGIRD+ TIA WLEKG++RVILGTVA+  P LVREA R F
Sbjct: 61  VNAAAVEAILARIAVPAQLGGGIRDMATIALWLEKGLARVILGTVAVENPGLVREAARAF 120

Query: 121 PGKVAVGIDAREGYVAVAGWAETSTIKALDLALKFEDSGVAAIIYTDINRDGAMGGVNVE 180
           PG+VAVGIDAR+G VA  GWA  + + A DLA  FED+GVAAIIYTDI+RDGAM G N+E
Sbjct: 121 PGRVAVGIDARKGRVATKGWATETDVMATDLARSFEDAGVAAIIYTDIDRDGAMAGPNIE 180

Query: 181 ATSDLAFHLTTPVIASGGVSSIDDLIALKKEEDTG-IEGVICGRALYDGRIDPKTALDLL 239
           AT  LA  ++ PVIASGGVSS+ DL+AL+   DTG I G I GRALYDG +D   AL  L
Sbjct: 181 ATDALARAVSIPVIASGGVSSLADLLALR---DTGSIAGAISGRALYDGALDLTQALQAL 237


Lambda     K      H
   0.318    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 259
Number of extensions: 15
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 239
Length adjustment: 24
Effective length of query: 225
Effective length of database: 215
Effective search space:    48375
Effective search space used:    48375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate WP_009566362.1 RSPH17029_RS04675 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.6240.in -d ../tmp/NCBI__GCF_000015985.1/orgs.faa -p T > /tmp/gapView.6240.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.