Alignments for a candidate for pcaF in Billgrantia desiderata SP1

Align β-ketoadipyl-CoA thiolase (EC 2.3.1.174; EC 2.3.1.223) (characterized)
to candidate WP_010626093.1 BZY95_RS06835 3-oxoadipyl-CoA thiolase

Query= metacyc::MONOMER-15952
         (401 letters)



>NCBI__GCF_002151265.1:WP_010626093.1
          Length = 401

 Score =  635 bits (1639), Expect = 0.0
 Identities = 324/401 (80%), Positives = 351/401 (87%)

Query: 1   MNEALIIDAVRTPIGRYAGALASVRADDLGAIPLKALIARHPQLDWSAVDDVIYGCANQA 60
           M +ALIIDA+RTPIGRY GALASVRADDLGA+PL+AL+ARHP LDW  VDD+ YGCANQA
Sbjct: 1   MKDALIIDAIRTPIGRYGGALASVRADDLGAVPLRALMARHPSLDWRQVDDIFYGCANQA 60

Query: 61  GEDNRNVARMAALLAGLPVSVPGTTLNRLCGSGLDAVGSAARALRCGEAGLMLAGGVESM 120
           GEDNRNVARM+ALLAGLPV VPGTT NRLCGSGLDAVG+AARA++ GEAGLM+AGGVESM
Sbjct: 61  GEDNRNVARMSALLAGLPVEVPGTTFNRLCGSGLDAVGNAARAIKTGEAGLMIAGGVESM 120

Query: 121 SRAPFVMGKSEQAFGRSAEIFDTTIGWRFVNKLMQQGFGIDSMPETAENVAAQFNISRAD 180
           SRAPFVMGK+EQAF RSAEIFDTTIGWRFVN+ M+  FGIDSMPETAENVA QF ISR D
Sbjct: 121 SRAPFVMGKAEQAFSRSAEIFDTTIGWRFVNRQMKAQFGIDSMPETAENVAEQFAISRED 180

Query: 181 QDAFALRSQHKAAAAIANGRLAKEIVAVEIAQRKGPAKIVEHDEHPRGDTTLEQLAKLGT 240
           QD FALRSQ + AAA+  GRLA EIV VE+A+RK    +V+ DEHPR  TTLEQLA L T
Sbjct: 181 QDLFALRSQQRTAAAMEAGRLAAEIVPVEVARRKQAPLVVDTDEHPRAATTLEQLAGLPT 240

Query: 241 PFRQGGSVTAGNASGVNDGACALLLASSEAAQRHGLKARARVVGMATAGVEPRIMGIGPV 300
           PFR+ GSVTAGNASGVNDGACALLLAS+E A+R GL+ RARVVGMAT GVEPRIMG GP 
Sbjct: 241 PFREDGSVTAGNASGVNDGACALLLASAEQAERFGLEPRARVVGMATVGVEPRIMGFGPA 300

Query: 301 PATRKVLELTGLALADMDVIELNEAFAAQGLAVLRELGLADDDERVNPNGGAIALGHPLG 360
           PATRKVL  TGL+L  MDVIELNEAFAAQ LAV R LGL DD E VNPNGGAIALGHPLG
Sbjct: 301 PATRKVLTQTGLSLEQMDVIELNEAFAAQALAVTRNLGLPDDAEHVNPNGGAIALGHPLG 360

Query: 361 MSGARLVTTALHELEERQGRYALCTMCIGVGQGIALIIERI 401
           MSGARLVTTAL+ELE RQGRYALCTMCIGVGQGIALIIER+
Sbjct: 361 MSGARLVTTALYELERRQGRYALCTMCIGVGQGIALIIERL 401


Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 600
Number of extensions: 15
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 401
Length adjustment: 31
Effective length of query: 370
Effective length of database: 370
Effective search space:   136900
Effective search space used:   136900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)

Align candidate WP_010626093.1 BZY95_RS06835 (3-oxoadipyl-CoA thiolase)
to HMM TIGR02430 (pcaF: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174))

Software error:

../bin/blast/fastacmd -i /tmp/list.20888.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20888.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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