Alignments for a candidate for paaJ2 in Billgrantia desiderata SP1

Align Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) (characterized)
to candidate WP_010626093.1 BZY95_RS06835 3-oxoadipyl-CoA thiolase

Query= reanno::Marino:GFF2751
         (415 letters)



>NCBI__GCF_002151265.1:WP_010626093.1
          Length = 401

 Score =  642 bits (1655), Expect = 0.0
 Identities = 325/406 (80%), Positives = 359/406 (88%), Gaps = 6/406 (1%)

Query: 7   LKDAYIVDAIRTPIGRYGGALSAVRADDLGAIPIKALAERYPDLDWSKIDDVLYGCANQA 66
           +KDA I+DAIRTPIGRYGGAL++VRADDLGA+P++AL  R+P LDW ++DD+ YGCANQA
Sbjct: 1   MKDALIIDAIRTPIGRYGGALASVRADDLGAVPLRALMARHPSLDWRQVDDIFYGCANQA 60

Query: 67  GEDNRDVARMSLLLAGLPVDVPGSTINRLCGSGMDAVGSAARAIRTGETQLMIAGGVESM 126
           GEDNR+VARMS LLAGLPV+VPG+T NRLCGSG+DAVG+AARAI+TGE  LMIAGGVESM
Sbjct: 61  GEDNRNVARMSALLAGLPVEVPGTTFNRLCGSGLDAVGNAARAIKTGEAGLMIAGGVESM 120

Query: 127 SRAPFVMGKADSAFSRKAEIFDTTIGWRFVNPVLKKQYGIDSMPETAENVAADFGISRED 186
           SRAPFVMGKA+ AFSR AEIFDTTIGWRFVN  +K Q+GIDSMPETAENVA  F ISRED
Sbjct: 121 SRAPFVMGKAEQAFSRSAEIFDTTIGWRFVNRQMKAQFGIDSMPETAENVAEQFAISRED 180

Query: 187 QDAFALRSQQRTAAAQKEGRLAAEITPVTIPRRKQDPLVVDTDEHPR-ETSLEKLASLPT 245
           QD FALRSQQRTAAA + GRLAAEI PV + RRKQ PLVVDTDEHPR  T+LE+LA LPT
Sbjct: 181 QDLFALRSQQRTAAAMEAGRLAAEIVPVEVARRKQAPLVVDTDEHPRAATTLEQLAGLPT 240

Query: 246 PFRENGTVTAGNASGVNDGACALLLAGADALKQYNLKPRARVVAMATAGVEPRIMGFGPA 305
           PFRE+G+VTAGNASGVNDGACALLLA A+  +++ L+PRARVV MAT GVEPRIMGFGPA
Sbjct: 241 PFREDGSVTAGNASGVNDGACALLLASAEQAERFGLEPRARVVGMATVGVEPRIMGFGPA 300

Query: 306 PATRKVLATAGLELADMDVIELNEAFAAQALAVTRDLGLPDDAEHVNPNGGAIALGHPLG 365
           PATRKVL   GL L  MDVIELNEAFAAQALAVTR+LGLPDDAEHVNPNGGAIALGHPLG
Sbjct: 301 PATRKVLTQTGLSLEQMDVIELNEAFAAQALAVTRNLGLPDDAEHVNPNGGAIALGHPLG 360

Query: 366 MSGARLVTTALNELERRHAAGQKARYALCTMCIGVGQGIALIIERM 411
           MSGARLVTTAL ELERR     + RYALCTMCIGVGQGIALIIER+
Sbjct: 361 MSGARLVTTALYELERR-----QGRYALCTMCIGVGQGIALIIERL 401


Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 591
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 401
Length adjustment: 31
Effective length of query: 384
Effective length of database: 370
Effective search space:   142080
Effective search space used:   142080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_010626093.1 BZY95_RS06835 (3-oxoadipyl-CoA thiolase)
to HMM TIGR02430 (pcaF: 3-oxoadipyl-CoA thiolase (EC 2.3.1.174))

Software error:

../bin/blast/fastacmd -i /tmp/list.3111.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3111.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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