Alignments for a candidate for argB in Methanothermobacter thermautotrophicus Delta H

Align acetylglutamate kinase (EC 2.7.2.8) (characterized)
to candidate WP_010875822.1 MTH_RS00840 acetylglutamate kinase

Query= BRENDA::Q9X2A4
         (282 letters)



>NCBI__GCF_000008645.1:WP_010875822.1
          Length = 293

 Score =  294 bits (752), Expect = 2e-84
 Identities = 147/291 (50%), Positives = 204/291 (70%), Gaps = 16/291 (5%)

Query: 5   TVNVLLEALPYIKEFYGKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGP 64
           TVN+L+EALPYIK+F+ K  +IK+GG AM  E A  +  +D +LLKY G++P++VHGGGP
Sbjct: 3   TVNILVEALPYIKKFHRKKIMIKYGGHAMIDEAAMDSTARDTVLLKYVGMEPVVVHGGGP 62

Query: 65  AISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKD 124
            IS+ M  +G EP F  G RVTDE+TMEIV+MVLVGKIN  IV  +  HGGRA+G+ GKD
Sbjct: 63  EISRAMNKMGKEPKFIEGLRVTDEETMEIVKMVLVGKINTSIVSKICYHGGRAIGLSGKD 122

Query: 125 SKLIVAEKETKHG------------DIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGE 172
           S L++A K   H             D+G VG+++ V+P I++ L +N+YIPVI+P+G+  
Sbjct: 123 SNLLLARKRAPHVVRDDETGERREIDLGLVGEIESVDPGIINMLTDNNYIPVISPIGVDR 182

Query: 173 DGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD----GKLISTLTPDEAEELIRDG 228
           D ++ N+NADT A E+A  + AEKLI+LTDV G+L+D      LI  ++ DE  +L++ G
Sbjct: 183 DANTLNLNADTVAGEVAAGIGAEKLIVLTDVPGILEDPSDPDTLIRRISVDELSDLVKSG 242

Query: 229 TVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKE 279
            V GGM+PK    + A+  GV + HII+G +EH++LLEIF++KGIGTMI E
Sbjct: 243 IVEGGMLPKTLTCIQAINDGVSSAHIIDGRVEHSLLLEIFTKKGIGTMITE 293


Lambda     K      H
   0.318    0.140    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 291
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 293
Length adjustment: 26
Effective length of query: 256
Effective length of database: 267
Effective search space:    68352
Effective search space used:    68352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate WP_010875822.1 MTH_RS00840 (acetylglutamate kinase)
to HMM TIGR00761 (argB: acetylglutamate kinase (EC 2.7.2.8))

Software error:

../bin/blast/fastacmd -i /tmp/list.584.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.584.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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