Alignments for a candidate for prs in Methanothermobacter thermautotrophicus Delta H

Align Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 (characterized)
to candidate WP_010876421.1 MTH_RS03680 ribose-phosphate diphosphokinase

Query= SwissProt::Q58761
         (284 letters)



>NCBI__GCF_000008645.1:WP_010876421.1
          Length = 285

 Score =  231 bits (589), Expect = 1e-65
 Identities = 116/284 (40%), Positives = 181/284 (63%), Gaps = 2/284 (0%)

Query: 2   IVVSGSQSQNLAFKVAKLLNTKLTRVEYKRFPDNEIYVRIVDEINDDEAVIINTQKNQND 61
           +++  S SQ LA  VA LL+  L  VE ++FPD E Y+R+ +E+  +  V+ +T   Q++
Sbjct: 1   MIIGCSASQKLAASVADLLDEPLCPVETRKFPDGERYIRVKEEVEGEVTVVQSTGYPQDE 60

Query: 62  AIVETILLCDALRDEGVKKITLVAPYLAYARQDKKFNPGEAISIRALAKIYSNI-VDKLI 120
            ++E + + + L+D G   +    PY  Y RQ+++F  GEA+S + +A +      D+++
Sbjct: 61  NLMELLFMIENLKDLGADYVRAAIPYFGYGRQERRFKSGEAVSAKIVAHLLEAAGADEIV 120

Query: 121 TINPHETHIKDFFTIPFIYGDAVPKLAEYVKDKLNDPIVLAPDKGALEFAKTASKILNAE 180
           T+N HE  + +FF +P     A+P +AE++   L+DP+++APDKGAL  A+  S IL  E
Sbjct: 121 TVNLHENCLSEFFRVPVRELSAMPLIAEHISF-LDDPVIIAPDKGALGHAREVSDILGCE 179

Query: 181 YDYLEKTRLSPTEIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAAC 240
            DY+EK R+SP  ++     LD + +D  +VDDIISTGGT+  A  +L + GA  I   C
Sbjct: 180 CDYMEKVRISPEVVETRVSDLDVEGKDAVVVDDIISTGGTIVNAAGILGKCGASSITVCC 239

Query: 241 VHPVLIGDALNKLYSAGVEEVVGTDTYLSEVSKVSVAEVIVDLL 284
           VHPVL+ DAL K++SAGVE V+ TDT  S+VS++SVA +I D++
Sbjct: 240 VHPVLVEDALLKIFSAGVERVIATDTLKSDVSEISVAPLIADVM 283


Lambda     K      H
   0.317    0.136    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 222
Number of extensions: 9
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 285
Length adjustment: 26
Effective length of query: 258
Effective length of database: 259
Effective search space:    66822
Effective search space used:    66822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate WP_010876421.1 MTH_RS03680 (ribose-phosphate diphosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.23618.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23618.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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