Alignments for a candidate for asd in Methanothermobacter thermautotrophicus Delta H

Align Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 (characterized)
to candidate WP_010876434.1 MTH_RS03755 aspartate-semialdehyde dehydrogenase

Query= SwissProt::Q57658
         (354 letters)



>NCBI__GCF_000008645.1:WP_010876434.1
          Length = 347

 Score =  395 bits (1016), Expect = e-115
 Identities = 198/343 (57%), Positives = 266/343 (77%), Gaps = 7/343 (2%)

Query: 9   IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKD 68
           + VGVLGATG VGQRF+Q+L  HP FELT LAAS RSAGK Y +   W+ D ++PE+++D
Sbjct: 2   VNVGVLGATGMVGQRFIQMLDKHPEFELTTLAASSRSAGKPYGEVANWYLDCEMPESVRD 61

Query: 69  MVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEEDVPLVIP 128
           M V+ TDP      DVDI+FSALP+D+A+K EP+FA E  ++ SNASA RME DVPLVIP
Sbjct: 62  MEVVETDPS--AVGDVDILFSALPADVARKVEPKFA-EKYIVASNASAMRMEPDVPLVIP 118

Query: 129 EVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAVSG 188
           EVN + L+LIE+Q+ +RGWDG I+TNPNCSTI   +TLKPI D + ++ V+++TMQAVSG
Sbjct: 119 EVNPEFLDLIEVQQRRRGWDGFIVTNPNCSTIALTLTLKPIYDAYTIKRVYVSTMQAVSG 178

Query: 189 AGYNGVPSMAILDNLIPFIKNEEEKMQTESLKLLGTLKDGKVELANFKISASCNRVAVID 248
           AGYNGVPSMAILDNL+PFI  EEEK++TE+L LLG L +G V+ A+F +SASC+RV V+D
Sbjct: 179 AGYNGVPSMAILDNLVPFIGGEEEKIETETLHLLGELDEGVVKPASFGVSASCHRVPVVD 238

Query: 249 GHTESIFVKTKEGAEPEEIKEVMDKFDPL-KDLNLPTY-AKPIVIREEIDRPQPRLDRNE 306
           GHTE++F++  +  + ++++E MDKF  L + L L +   KP+V+R+E +RPQPR+DR+ 
Sbjct: 239 GHTEAVFIELDDEFDIDDVREAMDKFRGLPQKLGLHSAPEKPVVVRDEENRPQPRMDRDM 298

Query: 307 GNGMSIVVGRIRKDPIF--DVKYTALEHNTIRGAAGASVLNAE 347
             GM++ VGR+R+D  F   ++Y  + HNT+RGAAGAS+LNAE
Sbjct: 299 DGGMAVTVGRLREDAAFKNSLRYVLVGHNTVRGAAGASILNAE 341


Lambda     K      H
   0.317    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 399
Number of extensions: 19
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 347
Length adjustment: 29
Effective length of query: 325
Effective length of database: 318
Effective search space:   103350
Effective search space used:   103350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate WP_010876434.1 MTH_RS03755 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR00978 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.2098.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2098.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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