Alignments for a candidate for asp-kinase in Methanothermobacter thermautotrophicus Delta H

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_010876437.1 MTH_RS03770 aspartate kinase

Query= BRENDA::P08495
         (408 letters)



>NCBI__GCF_000008645.1:WP_010876437.1
          Length = 406

 Score =  174 bits (441), Expect = 4e-48
 Identities = 130/411 (31%), Positives = 219/411 (53%), Gaps = 16/411 (3%)

Query: 1   MGLIVQKFGGTSVGSVEKIQNAANRAIAEKQKGHQVVVVVSAMGKSTDELVSLA-KAISD 59
           M LIV KFGGTS+G+  +I+ AA   + E  KG +VVVVVSA+ K+TDEL+ +  +A+ D
Sbjct: 1   MELIVAKFGGTSIGNGRRIKKAARSVVKEYMKGRKVVVVVSAINKTTDELLQIVDEAMED 60

Query: 60  QPSKREMDMLLATGEQVTISLLSMALQEKGYDAVSYTGW--QAGIRTEAIHGNARI---- 113
             +++++  +++ GE  ++ + S A++  G  +     +  +  I T++   NA++    
Sbjct: 61  AVTEKQLAEIVSMGEMTSVRIFSSAIEALGVKSEYIDPFMDEWPIITDSNLLNAKVDFEA 120

Query: 114 TDIDTSVLADQLEKGKIVIVAGFQGMTEDCEITTLGRGGSDTTAVALAAALKADKCDIYT 173
           T+  +  L   L++G I +V GF G   +  ITTLGRGGSD TA  L   LKAD+  I T
Sbjct: 121 TEEKSRELLKLLDQGIIPVVCGFLGRDPNGYITTLGRGGSDITAFLLGHCLKADEVIIVT 180

Query: 174 DVPGVFTTDPRYVKSARKLEGISYDEMLELANLGAGVLHPRAVEFAKNYQVPLEVRSSTE 233
           DV GV +TDP  ++ A+KL+ IS +EM +LA  GA VLHP A+++ K+  +  ++     
Sbjct: 181 DVGGVMSTDPNKLQGAKKLDKISVEEMRDLATHGAQVLHPHALKY-KDPDIKAKIIGFEH 239

Query: 234 TEAGTLIEEESSMEQNLIVRGIAFE-DQITRVTIYG--LTSGLTTLSTIFTTLAKRNINV 290
            +      E     +N +V+      D I+ V + G  + +    L+ + + LA+ +IN+
Sbjct: 240 GDLSAPGTEIIGPSKNKMVKTTTLNPDPISVVAVVGEKILNKPGILARLTSRLAENSINI 299

Query: 291 DIIIQTQAEDKTGISFSVKTEDADQTVAVLEEYKDA-LEFEKIETESKLAKVSIVGSGMV 349
            I I T    +  ++  V  +DAD+   +L +   A  +   +     +A ++I     +
Sbjct: 300 -IGIST---GQNSVTIFVDKKDADEAHRLLHDVVIADDDLSSLSLGRDIAMITISSPDFI 355

Query: 350 SNPGVAAEMFAVLAQKNILIKMVSTSEIKVSTVVSENDMVKAVESLHDAFE 400
             PG+ +E+   L   ++ I  +S+S+  V   V  ND  KA E +    E
Sbjct: 356 DTPGIISEITKPLRDNDLNIVEISSSQTSVVIFVDWNDGKKAYELVRGVLE 406


Lambda     K      H
   0.313    0.128    0.337 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 336
Number of extensions: 21
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 406
Length adjustment: 31
Effective length of query: 377
Effective length of database: 375
Effective search space:   141375
Effective search space used:   141375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)

Align candidate WP_010876437.1 MTH_RS03770 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.11598.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11598.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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