Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_010961104.1 MCA_RS09100 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000008325.1:WP_010961104.1
Length = 1072
Score = 1516 bits (3925), Expect = 0.0
Identities = 759/1072 (70%), Positives = 901/1072 (84%), Gaps = 1/1072 (0%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKRTDIKSIL+LGAGPIVIGQACEFDYSGAQACKAL+EEGYRVILVNSNPATIMTDPEM
Sbjct: 1 MPKRTDIKSILLLGAGPIVIGQACEFDYSGAQACKALKEEGYRVILVNSNPATIMTDPEM 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
ADATYIEPI W+ V +IIEKERPDA+LPTMGGQTALNCAL+L+R+GVLE FGV MIGA+
Sbjct: 61 ADATYIEPIDWQTVARIIEKERPDALLPTMGGQTALNCALDLDREGVLERFGVEMIGASR 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
+AI KAEDR +F AM KIGL +S +AH++EEAL+V VG+P IIRPSFT+GGSGGG
Sbjct: 121 EAIAKAEDRDQFRKAMIKIGLSVPKSEVAHSLEEALSVLDMVGYPAIIRPSFTLGGSGGG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
IAYNREEF EIC RGL+LSPT ELLI+ES++GWKEYEMEVVRD+ DNCIIVCSIEN D M
Sbjct: 181 IAYNREEFVEICERGLELSPTHELLIEESVLGWKEYEMEVVRDRADNCIIVCSIENLDPM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPAQTLTDKEYQIMR+AS+AVLREIGV+TGGSNVQFAVNP++GRLIVIEM
Sbjct: 241 GVHTGDSITVAPAQTLTDKEYQIMRDASIAVLREIGVDTGGSNVQFAVNPRDGRLIVIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEL N+ITGG PASFEP+IDYVVTK+P
Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELRNEITGGAMPASFEPTIDYVVTKVP 360
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420
RF FEKF A+DRLTTQMKSVGE MAIGRT QESLQKALR LE+G G K++ D +
Sbjct: 361 RFTFEKFPQADDRLTTQMKSVGEAMAIGRTFQESLQKALRSLEIGVDGLVGKLTADSDDR 420
Query: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480
+ +++REL G DR++Y+ADAFR G S+D V L+ ID WFL QIE+L+ E +A+
Sbjct: 421 VERLQRELGHPGCDRLFYVADAFRLGWSLDQVHELSAIDPWFLAQIEDLILEEAALAKRT 480
Query: 481 ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT 540
+ L D L LKRKGF+D+RLA+L EAE+R +R ++ + PVYKR+D+CAAEFAT T
Sbjct: 481 LASLTPDELLALKRKGFSDSRLARLLDRSEAEVRAVRHRFGIRPVYKRIDSCAAEFATVT 540
Query: 541 AYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN 600
AY+YSTYEEECEA P TDREKI+VLGGGPNRIGQGIEFDYCCVHA++ALREDG+ETIM+N
Sbjct: 541 AYLYSTYEEECEAAP-TDREKIVVLGGGPNRIGQGIEFDYCCVHAAMALREDGFETIMIN 599
Query: 601 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP 660
CNPETVSTD+DTSDRLYFEP+TLEDVLE+V +EKPKGVIVQYGGQTPLKLARALEAAGVP
Sbjct: 600 CNPETVSTDFDTSDRLYFEPLTLEDVLEVVHLEKPKGVIVQYGGQTPLKLARALEAAGVP 659
Query: 661 VIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720
+IGTSPD+ID AEDRERFQ ++RL LKQP N T ++E A+ A+EIGYPLVVRPSYVL
Sbjct: 660 IIGTSPDSIDLAEDRERFQKLIDRLNLKQPPNRTARSLEEALRGAQEIGYPLVVRPSYVL 719
Query: 721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME 780
GGRAMEIV+++ DL+RY AVSVSN++PVLLD FL DA+E+DVDA+ DG+ V+IGG+M+
Sbjct: 720 GGRAMEIVFNDDDLKRYMLEAVSVSNESPVLLDRFLSDAIEMDVDAVADGQRVMIGGLMQ 779
Query: 781 HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI 840
HIEQAGVHSGDSACS+P Y L +IQD +R+QV+ LA L V GLMN QFA++++E++++
Sbjct: 780 HIEQAGVHSGDSACSIPPYDLRADIQDRVREQVRLLAEALGVVGLMNTQFAIQDDEIFVL 839
Query: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKF 900
EVNPRA+RTVPFVSKATG PLAKVAAR M G+SL +QGV++E +PPY+SVKE V PF KF
Sbjct: 840 EVNPRASRTVPFVSKATGYPLAKVAARCMVGRSLDQQGVSEERVPPYFSVKEAVFPFIKF 899
Query: 901 PGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL 960
PGVDPLLGPEM+STGEVMGVG +F EA+AKAQ ++ + G L+S+R+ DK ++V +
Sbjct: 900 PGVDPLLGPEMKSTGEVMGVGASFGEAYAKAQRAASVRLAYEGTTLISIRDADKPKIVPI 959
Query: 961 AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGR 1020
A L+ +GF L AT GTA VL +AG+ VNKV+EGRPHI D IKNG+ IINTT G+
Sbjct: 960 AKALVARGFRLVATRGTAKVLQDAGVPCEKVNKVYEGRPHIVDMIKNGQIQLIINTTEGK 1019
Query: 1021 RAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQI 1072
+AI DS IRR ALQ++V Y TT++G A AL+ + V +Q++H +
Sbjct: 1020 KAIADSFTIRRQALQHQVTYTTTISGAHAICCALDELGSVDVNRLQDLHGAL 1071
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3070
Number of extensions: 119
Number of successful extensions: 12
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1072
Length adjustment: 45
Effective length of query: 1028
Effective length of database: 1027
Effective search space: 1055756
Effective search space used: 1055756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_010961104.1 MCA_RS09100 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.10111.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.10111.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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