Alignments for a candidate for argI in Clostridium acetobutylicum ATCC 824

Align ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate WP_010963639.1 CA_RS01820 ornithine carbamoyltransferase

Query= metacyc::ORNCARBAMTRANSFERST-MONOMER
         (332 letters)



>NCBI__GCF_000008765.1:WP_010963639.1
          Length = 333

 Score =  409 bits (1050), Expect = e-119
 Identities = 197/330 (59%), Positives = 259/330 (78%), Gaps = 2/330 (0%)

Query: 5   LKGRSFLTLKHFTPEEINYLLDLSADLKAKKRAGIKGNLLEGKNVVLLFEKTSTRTRCAF 64
           LK R+FL+L  FTP++INY+LDL+  LK  KR G++   L+ KN+ L+FEK STRTRC+F
Sbjct: 4   LKNRNFLSLMDFTPQDINYMLDLAKKLKEDKRNGLEEQYLKKKNIALIFEKDSTRTRCSF 63

Query: 65  EVGVLDEGGHVTFLGSGDSQMGKKESIEDTAKVLGRFYDGIEFRGFKQETVEILAANAGV 124
           EV   D+G H  ++GS  SQ+ KKESI+DTA+VLGR +D IE+RG+ QE VEILA ++ V
Sbjct: 64  EVAAHDQGAHAVYIGSTGSQISKKESIKDTARVLGRMFDAIEYRGYGQEVVEILAEHSNV 123

Query: 125 PVWNGLTDLYHPTQILADFLTIKEHVAKPLNKVKFVYAGDARNNMGNSLMIGAAKMGMEF 184
           PVWNGLTD  HPTQ++A+F+T+KE   KPLN++KFVY GDARNN+ N+LMIGAAKMGM+F
Sbjct: 124 PVWNGLTDEEHPTQVIANFMTLKEKFNKPLNEIKFVYCGDARNNVSNALMIGAAKMGMDF 183

Query: 185 WGLAPKELWPSEELVAEMKEVAKETGASINFSENVDD-VKNADVIYTDVWVSMGEE-AMF 242
              APK L+PS ELV +  ++A+ TG  I  S+ VD+ V  ADV+YTDVWVSMGE+  ++
Sbjct: 184 RIAAPKSLFPSSELVKKCMDIAELTGGKITLSDEVDEAVFGADVLYTDVWVSMGEDREVW 243

Query: 243 EERIKQLKPYQVNMDMIKKTENPDVLFLHCLPAFHDLNTTVGKDIYEKFGLESMEVTDEV 302
           +ER+K LKPYQ+NM+MI KT+NP+V F+HCLPAFHD +T   K+IY++F     EVTDEV
Sbjct: 244 KERLKMLKPYQINMEMISKTKNPNVKFMHCLPAFHDFSTDAAKEIYDEFNEIPFEVTDEV 303

Query: 303 FRSRHSKVFDEAENRMHTIKAVMVATIGNL 332
           F S +S  FDEAENR+H+IKA+MVAT+G++
Sbjct: 304 FESDYSLAFDEAENRLHSIKAIMVATLGDI 333


Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 357
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 333
Length adjustment: 28
Effective length of query: 304
Effective length of database: 305
Effective search space:    92720
Effective search space used:    92720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_010963639.1 CA_RS01820 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.4382.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4382.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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