Alignments for a candidate for leuD in Clostridium acetobutylicum ATCC 824

Align 3-isopropylmalate dehydratase (EC 4.2.1.33) (characterized)
to candidate WP_010966449.1 CA_RS16290 3-isopropylmalate dehydratase small subunit

Query= BRENDA::Q58673
         (168 letters)



>NCBI__GCF_000008765.1:WP_010966449.1
          Length = 163

 Score =  183 bits (465), Expect = 1e-51
 Identities = 87/158 (55%), Positives = 117/158 (74%)

Query: 5   IKGRVWKFGNNVDTDAILPARYLVYTKPEELAQFVMTGADPDFPKKVKPGDIIVGGKNFG 64
           + G V K+G+N+DTD I+PARYL  + PEELA+  M   D DF KK+K GDI+VGG+NFG
Sbjct: 3   VNGDVLKYGDNIDTDVIIPARYLNTSVPEELAKHCMEDLDVDFLKKLKTGDIVVGGRNFG 62

Query: 65  CGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECKGISEKVNEGDELEVNL 124
           CGSSREHAP+ +K AG+SCVIA+SFARIFYRN+IN+G P++EC+      + GD+LEV+ 
Sbjct: 63  CGSSREHAPICIKAAGVSCVIAKSFARIFYRNSINIGFPILECEEAVNDASTGDKLEVDF 122

Query: 125 ETGEIKNLTTGEVLKGQKLPEFMMEILEAGGLMPYLKK 162
             G IKN+T  +  K Q  P+FM++I++  GL   +KK
Sbjct: 123 IEGIIKNVTLNKEYKAQPFPDFMLKIMKNEGLTNCVKK 160


Lambda     K      H
   0.317    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 131
Number of extensions: 4
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 163
Length adjustment: 18
Effective length of query: 150
Effective length of database: 145
Effective search space:    21750
Effective search space used:    21750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)

Align candidate WP_010966449.1 CA_RS16290 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR02084 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.456.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.456.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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