Alignments for a candidate for proB in Clostridium acetobutylicum ATCC 824

Align Glutamate 5-kinase; LdG5K; Gamma-glutamyl kinase; EC 2.7.2.11 (characterized)
to candidate WP_010966527.1 CA_RS16750 glutamate 5-kinase

Query= SwissProt::A0A0R6Y3I5
         (263 letters)



>NCBI__GCF_000008765.1:WP_010966527.1
          Length = 267

 Score =  187 bits (474), Expect = 3e-52
 Identities = 109/258 (42%), Positives = 157/258 (60%), Gaps = 8/258 (3%)

Query: 5   LKSVKRIVVKVGSSILVDNQEIAA-HRIEALCQFIADLQTK-YEVILVTSGAVAAGYTK- 61
           L +V R+V+KVGSS L     +   ++IE + + IADL  +  +VILV+SGA+ AG  K 
Sbjct: 8   LSNVNRLVIKVGSSTLTHPSGLLNFYKIEHIVRQIADLHNQGIKVILVSSGAIGAGIGKL 67

Query: 62  --KEMDKSYVPNKQALASMGQPLLMHMYYTELQKHGILCAQMLLAAYDLDSRKRTINAHN 119
             KE  K+ +P KQA A++GQ +LMH Y     ++G +  Q+L+   DL S+KR +N  N
Sbjct: 68  RLKERPKT-IPEKQAAAAVGQGVLMHTYEKLFAEYGQIVGQILITREDLSSKKRVVNVQN 126

Query: 120 TIEVLISHKVIPIINENDATALEELVFGDNDRLSALVAHHFKANLLVILSDIDGYYTENP 179
           T   L+ H +IPI+NENDAT +EE+ FGDND LSA VA   KA+LL++LSDIDG Y  NP
Sbjct: 127 TFSALLDHGIIPIVNENDATVVEEIKFGDNDTLSARVASLIKADLLILLSDIDGLYDSNP 186

Query: 180 RTSTNATIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHL 239
             + NA +   V+E++ +   +     ++  TGG+ TK++AA+   E G  M +++G   
Sbjct: 187 AVNKNAVLIDTVNEVNEEVKASAGGAGSKLGTGGMATKIRAAEIATENGISMVIANGEKQ 246

Query: 240 EKARQFLLGGSHEIGTLF 257
           E  R  L       GTLF
Sbjct: 247 EAIRNIL--NFENEGTLF 262


Lambda     K      H
   0.319    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 161
Number of extensions: 7
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 267
Length adjustment: 25
Effective length of query: 238
Effective length of database: 242
Effective search space:    57596
Effective search space used:    57596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)

Align candidate WP_010966527.1 CA_RS16750 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.22425.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22425.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.