Alignments for a candidate for asp-kinase in Methanosarcina acetivorans C2A

Align aspartate kinase (EC 2.7.2.4) (characterized)
to candidate WP_011020190.1 MA_RS00690 aspartate kinase

Query= BRENDA::Q57991
         (473 letters)



>NCBI__GCF_000007345.1:WP_011020190.1
          Length = 472

 Score =  464 bits (1194), Expect = e-135
 Identities = 243/469 (51%), Positives = 333/469 (71%), Gaps = 11/469 (2%)

Query: 1   MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVR 60
           M  VMKFGGTSVG G++IRHVA+++ +  +E + +VVV SA+  VT+ L+E ++ A    
Sbjct: 1   MKIVMKFGGTSVGDGKKIRHVAQLLKRYHEEGNQIVVVTSALGGVTDRLLENARLASTKG 60

Query: 61  DIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPK 120
            ++ V +F   +  KH++A+++AI+   + +EV +++D RIEELEK LIG+ YLGELT +
Sbjct: 61  KVSLVKEFKTELTNKHHEAVKDAIEDPRVAKEVLQVLDLRIEELEKALIGICYLGELTSR 120

Query: 121 SRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARV--KRLEVKERL 178
           S DYI S+GERL++PI+SGA+R LG  SI   GGEAGI+T +++G+AR   K  E+  + 
Sbjct: 121 SIDYISSYGERLAAPIVSGAVRSLGAASIEYTGGEAGIVTTSDYGNARPLEKTYELVLKR 180

Query: 179 LPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTT 238
           L    E  I VVTGFIG  E+G ITTLGR GSD+SA+++G  L AD I +W +V+G+ TT
Sbjct: 181 LGCRLESHILVVTGFIGENEDGIITTLGRSGSDFSASILGAALKADEIWLWKEVNGIMTT 240

Query: 239 DPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLI 298
           DPR+VP A+ IP++SY EAMEL+YFGA VLHPRTIEPAM + IP+ VKNTF PE  GTL+
Sbjct: 241 DPRIVPEAKTIPQISYAEAMELSYFGANVLHPRTIEPAMREHIPVRVKNTFNPEFPGTLV 300

Query: 299 TNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE 358
             +      +VKA+S IKNVALINI GA M G  GT AR+F AL    VN+++ISQGSSE
Sbjct: 301 VAEKFQCRHVVKAVSLIKNVALINISGAEMPGTVGTVARLFTALARAGVNIVMISQGSSE 360

Query: 359 TNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVISVVGAGMRGAK 418
           +N+S VVSE  V+ ALKAL  EF         N  ++++++ D++VCV++VVGAGM G  
Sbjct: 361 SNLSFVVSESHVESALKALHAEF---------NREIVKEITSDRNVCVVAVVGAGMAGTP 411

Query: 419 GIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKF 467
           G+A ++F A+  S  NI MI+QGSS+ NISFV+ E D    V+ LH++F
Sbjct: 412 GVAKRVFGALGNSMINIIMISQGSSQYNISFVVREGDAFAAVKTLHDEF 460


Lambda     K      H
   0.316    0.135    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 585
Number of extensions: 22
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 472
Length adjustment: 33
Effective length of query: 440
Effective length of database: 439
Effective search space:   193160
Effective search space used:   193160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate WP_011020190.1 MA_RS00690 (aspartate kinase)
to HMM TIGR00657 (aspartate kinase (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.2921.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2921.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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