Alignments for a candidate for hisF in Methanosarcina acetivorans C2A

Align Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 (characterized)
to candidate WP_011020590.1 MA_RS02840 imidazole glycerol phosphate synthase subunit HisF

Query= SwissProt::Q7SIB9
         (252 letters)



>NCBI__GCF_000007345.1:WP_011020590.1
          Length = 273

 Score =  269 bits (687), Expect = 5e-77
 Identities = 145/272 (53%), Positives = 187/272 (68%), Gaps = 23/272 (8%)

Query: 3   LAKRIVPCLDVHAGR----VVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHE 58
           L KRI+PCLDV   R    VVKGV FV+L++AGDPVE A+ Y+E GADELVFLDI+A+  
Sbjct: 2   LTKRIIPCLDVTLDRAGGCVVKGVEFVDLKEAGDPVELAKRYNEDGADELVFLDITASAH 61

Query: 59  ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELA 118
            R  ++DV+ R A+ VFIPLTVGGG+ S++  R++L +GADKVSVN++AV+ P+ I+E +
Sbjct: 62  GRETMIDVIERTADEVFIPLTVGGGISSIDAIRQILRAGADKVSVNTSAVKNPDFIKESS 121

Query: 119 DHFGAQAVVLAIDARWRGDFP------------------EVHVAGGRVPTGLHAVEWAVK 160
           D FGAQ +V AID R   D                    EV + GGR  TG+ AV+WA K
Sbjct: 122 DIFGAQCIVTAIDCRRNTDIKNNPDKTVLELEDGTPAWYEVVIYGGREATGIDAVQWAKK 181

Query: 161 GVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAG-A 219
             ELG+GEILLTSMDRDGT  GYDL +TR ++E + +P+IASGG G  +H  E F  G A
Sbjct: 182 AEELGSGEILLTSMDRDGTCAGYDLPITRKLSEELDIPIIASGGVGNPQHIYEGFSEGKA 241

Query: 220 EAALAASVFHFGEIPIPKLKRYLAEKGVHVRL 251
           +AALAAS+FHF E  I ++K YL E+ + VRL
Sbjct: 242 DAALAASIFHFSEYSIWEVKEYLREREIPVRL 273


Lambda     K      H
   0.321    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 221
Number of extensions: 11
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 273
Length adjustment: 25
Effective length of query: 227
Effective length of database: 248
Effective search space:    56296
Effective search space used:    56296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_011020590.1 MA_RS02840 (imidazole glycerol phosphate synthase subunit HisF)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.14436.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14436.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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