Alignments for a candidate for hisH in Methanosarcina acetivorans C2A

Align IGP synthase, amidotransferase subunit (EC 4.3.2.10) (characterized)
to candidate WP_011020951.1 MA_RS04735 imidazole glycerol phosphate synthase subunit HisH

Query= reanno::HerbieS:HSERO_RS20325
         (212 letters)



>NCBI__GCF_000007345.1:WP_011020951.1
          Length = 202

 Score =  166 bits (419), Expect = 4e-46
 Identities = 93/212 (43%), Positives = 132/212 (62%), Gaps = 17/212 (8%)

Query: 1   MNKIVVVDYGMGNLRSVAQALRHVAPEADVRISGEVADIRAADRVVLPGQGAMPDCMRSL 60
           M +IV++DYG+GNLRSV + L HV   A+  ISG   +I  AD ++LPG GA  D M+ L
Sbjct: 1   MKRIVIIDYGLGNLRSVQKGLEHVG--ANPAISGNPEEILTADGIILPGVGAFIDAMKCL 58

Query: 61  RESGVQDAVIE-ASRTKPLFGVCVGEQMLFDWSEEGD-TPGLGLLPGKVVRFDLEGMRQD 118
               ++  + E A   KP+ G+C+G+Q+L   SEEG  T GL L+ G+V+RF        
Sbjct: 59  IP--LKGVIAEFAESGKPMLGICLGQQVLMSSSEEGRLTGGLDLIQGRVLRFPK------ 110

Query: 119 DGSLFKVPQMGWNHVHQTSRHPLWEGIADNAFFYFVHSYYAVPAESAHVVGQTPYGRDFA 178
             S  KVP MGWN++     HPL++GI+D +F YFVHSYY V   + + +    YG DF+
Sbjct: 111 --SELKVPHMGWNNIRIKQDHPLFKGISDGSFVYFVHSYY-VDTTAENTLASCEYGLDFS 167

Query: 179 CAV--ARDNIFATQFHPEKSASAGLQLYRNFV 208
            +V  ++ N+  TQFHPEKS + GL++ +NFV
Sbjct: 168 ASVVNSKGNVMGTQFHPEKSGTTGLKILKNFV 199


Lambda     K      H
   0.322    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 131
Number of extensions: 9
Number of successful extensions: 6
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 202
Length adjustment: 21
Effective length of query: 191
Effective length of database: 181
Effective search space:    34571
Effective search space used:    34571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_011020951.1 MA_RS04735 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.19924.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19924.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.