Alignments for a candidate for prs in Methanosarcina acetivorans C2A

Align Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 (characterized)
to candidate WP_011021191.1 MA_RS06075 ribose-phosphate diphosphokinase

Query= SwissProt::Q58761
         (284 letters)



>NCBI__GCF_000007345.1:WP_011021191.1
          Length = 283

 Score =  216 bits (549), Expect = 6e-61
 Identities = 121/285 (42%), Positives = 176/285 (61%), Gaps = 6/285 (2%)

Query: 1   MIVVSGSQSQNLAFKVAKLLNTKLTRVEYKRFPDNEIYVRIVDEINDDEAVIINTQKNQN 60
           M ++ G  SQ LA + A+ L T+    E+ RFPD E+Y+RI DEI +++  II +    +
Sbjct: 1   MKIIGGPASQLLASRTARALGTEPVLCEFNRFPDGELYLRIADEIENEKVTIIQSTPTDS 60

Query: 61  DAIVETILLCDALRDEGVKKITLVAPYLAYARQDKKFNPGEAISIRALAKIYSNIVDKLI 120
           D  V  + L DA   EG  +I +V PY+ YARQDKKF PGE+IS RA+A+  +    ++ 
Sbjct: 61  D-FVALLQLIDAC--EGAAEINVVIPYMGYARQDKKFKPGESISARAIARCIN--ASRIF 115

Query: 121 TINPHETHIKDFFTIPFIYGDAVPKLAEYVKDK-LNDPIVLAPDKGALEFAKTASKILNA 179
           TIN HE  I D F  P +  DA   + EY+    L +P+++APD+GA    K  +     
Sbjct: 116 TINIHERSILDHFPCPAVNLDAASLVGEYIAGSGLENPMLVAPDEGAQGLVKNVAAGHGF 175

Query: 180 EYDYLEKTRLSPTEIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAA 239
           ++D+L+KTRLS   + I  K LD   R V +VDD+I+TGGTMA +V++LK QGA  +  A
Sbjct: 176 DHDHLQKTRLSGDTVVIKTKNLDVTGRHVVLVDDMIATGGTMAESVRMLKAQGAIDVHLA 235

Query: 240 CVHPVLIGDALNKLYSAGVEEVVGTDTYLSEVSKVSVAEVIVDLL 284
           CVHPVL  +A  +L++AGV++++ TDT     S +SVA +I + L
Sbjct: 236 CVHPVLTRNAALRLFNAGVKDIIATDTLEKAESLLSVAPLIAEAL 280


Lambda     K      H
   0.317    0.136    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 215
Number of extensions: 8
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 283
Length adjustment: 26
Effective length of query: 258
Effective length of database: 257
Effective search space:    66306
Effective search space used:    66306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate WP_011021191.1 MA_RS06075 (ribose-phosphate diphosphokinase)
to HMM TIGR01251 (prs: ribose-phosphate diphosphokinase (EC 2.7.6.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.20136.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.20136.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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