Align Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 (characterized)
to candidate WP_011022129.1 MA_RS11130 carbamoyl-phosphate synthase large subunit
Query= SwissProt::P25994
(1071 letters)
>NCBI__GCF_000007345.1:WP_011022129.1
Length = 1070
Score = 1098 bits (2841), Expect = 0.0
Identities = 567/1059 (53%), Positives = 758/1059 (71%), Gaps = 17/1059 (1%)
Query: 1 MPKRVDINKILVIGSGPIIIGQAAEFDYAGTQACLALKEEGYEVILVNSNPATIMTDTEM 60
MPKR DI K+L+IGSGPI IGQAAEFD++G+QAC +LKEEG +V+LVNSNPATIMTD EM
Sbjct: 1 MPKREDIKKVLLIGSGPITIGQAAEFDFSGSQACRSLKEEGVQVVLVNSNPATIMTDPEM 60
Query: 61 ADRVYIEPLTPEFLTRIIRKERPDAILPTLGGQTGLNLAVELSERGVLAECGVEVLGTKL 120
AD VYIEPL + +II KERPD I+ +GGQTGLN+ EL+E GV + GV++LGT +
Sbjct: 61 ADSVYIEPLDARIVEKIIEKERPDGIIAGIGGQTGLNITSELAEMGVFEKYGVQILGTPV 120
Query: 121 SAIQQAEDRDLFRTLMNELNEPVPESEIIHSLEEAEKFVSQIGFPVIVRPAYTLGGTGGG 180
AI+ EDR+LF+ M + E VP+S +H+L+EAE+ V ++G P+IVRPAYTLGG GGG
Sbjct: 121 EAIKNTEDRELFKETMLRIGEKVPQSRAVHTLKEAEEVVEELGLPLIVRPAYTLGGAGGG 180
Query: 181 ICSNETELKEIVENGLKLSPVHQCLLEKSIAGYKEIEYEVMRDSQDHAIVVCNMENIDPV 240
I + EL EI E GL+ S + Q L+E+S+ G+ E+EYEVMRD+ D IV+CNMENIDP+
Sbjct: 181 IARTKEELLEITERGLRRSRISQVLIEESVLGWAEVEYEVMRDANDTCIVICNMENIDPM 240
Query: 241 GIHTGDSIVVAPSQTLSDREYQLLRNVSLKLIRALGIEGGCNVQLALDPDSFQYYIIEVN 300
G+HTG+S VVAPSQTL+D E+Q+LR+ S+K+IRAL IEGGCN+Q AL Y I+EVN
Sbjct: 241 GVHTGESAVVAPSQTLTDAEHQMLRSASIKIIRALKIEGGCNIQYALKEG--DYRIVEVN 298
Query: 301 PRVSRSSALASKATGYPIAKLAAKIAVGLSLDEMMNPVTGKTYAAFEPALDYVVSKIPRW 360
PRVSRSSALASKATGYPIA++ AKIA+G++LDE++N VT T A+FEPALDYV++KIPRW
Sbjct: 299 PRVSRSSALASKATGYPIARVTAKIAIGMALDEIINSVTKNTPASFEPALDYVITKIPRW 358
Query: 361 PFDKFESANRKLGTQMKATGEVMAIGRTLEESLLKAVRSLEADVYHLELKDAADISDELL 420
PFDKF +A++ L T MK+TGE+MAIGRT+EESLLKA +SL+ D +L + E +
Sbjct: 359 PFDKFVTADKTLTTAMKSTGEIMAIGRTMEESLLKAFKSLDID---SQLGNKRWDEHE-V 414
Query: 421 EKRIKKAGDERLFYLAEAYRRGYTVEDLHEFSAIDVFFLHKLFGIVQFEKELKANAGDTD 480
+ +K ERLF + A RG +V+++ E ++I+ FF+ K+ IV+ EK ++ ++
Sbjct: 415 KTLLKTPTSERLFVIFHALERGMSVKEIAELTSINPFFISKIKKIVEMEKRIRTEELTSE 474
Query: 481 VLRRAKELGFSDQYISREWKMKESELYSLRKQAGIAPVFKMVDTCAAEFESETPYFYSTY 540
+LR K+LGF D ++ ++ LR AGI FKMVDTCAAEF++ TPY+YSTY
Sbjct: 475 LLREVKKLGFPDTRLAELTGKTREQISDLRHDAGILATFKMVDTCAAEFQAATPYYYSTY 534
Query: 541 EEENESVVTDKKSVMVLGSGPIRIGQGVEFDYATVHSVWAIKQAGYEAIIVNNNPETVST 600
E+ E+ TD+K +++LG+GPIRIGQG+EFDY TVH+V A+++ G E I+NNNPETVST
Sbjct: 535 EDTCETNPTDRKKILILGAGPIRIGQGIEFDYCTVHAVTALREEGIETHIINNNPETVST 594
Query: 601 DFSISDKLYFEPLTIEDVMHIIDLEQPMGVVVQFGGQTAINLA----DELSAR---GVKI 653
DF SDKL+FEPLT+E VM++I+ E+P GV+VQFGGQT++NLA EL R I
Sbjct: 595 DFDTSDKLFFEPLTMEYVMNVIERERPDGVLVQFGGQTSVNLALPLKKELKRRTDLDTMI 654
Query: 654 LGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVNQAVSIASDIGYPVLVRPSYVLG 713
+GT ED+D AEDR+KF + + G+ QP G ATS ++A+ +A IG+PVLVRPSYVLG
Sbjct: 655 MGTDPEDMDLAEDREKFYVLMQKFGILQPEGGYATSQHEAIEVAQRIGFPVLVRPSYVLG 714
Query: 714 GRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGK-EIEVDAVSDGETVVIPGIMEH 772
GRAMEIVY E +L YMK AV+++P+HP+LID +L G EI+VDAV D + V+I IMEH
Sbjct: 715 GRAMEIVYDEIDLERYMKEAVRVSPEHPILIDDFLEGACEIDVDAVCDRKDVLIGAIMEH 774
Query: 773 IERAGVHSGDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGLLNIQFVLSQGEVYVLE 832
IE AGVHSGDS V PPQSL+ED+ ++ YT +A GL + GL+NIQ G+V+VLE
Sbjct: 775 IEEAGVHSGDSACVIPPQSLSEDVLAQVRDYTRKIALGLRVKGLINIQMAEKGGKVFVLE 834
Query: 833 VNPRSSRTVPFLSKITGIPMANLATKIILGQKLAAFGYTEGLQPEQQGVFVKAPVFSFAK 892
NPRSSRT+PF+SK G+P+A +A ++I G L GYT+ +P+ + V +K + F K
Sbjct: 835 ANPRSSRTIPFVSKAVGLPLAKIAARVIAGHSLKEMGYTD--EPKPKHVSIKEVLLPFDK 892
Query: 893 LRRVDITLGPEMKSTGEVMGKDSTLEKALYKALIASGIQIPNYGSVLLTVADKDKEEGLA 952
L D LGPEMKSTGEVMG D +A YKA +A+ +P G V L++ + DK E +
Sbjct: 893 LPGADPVLGPEMKSTGEVMGIDYDFGRAYYKAELAADNLLPLTGKVFLSIRNADKPELVE 952
Query: 953 IAKRFHAIGYNILATEGTAGYLKEASIPAKVVGKIGQDGPNLLDVIRNGEAQFVINTLTK 1012
+A++ A G ++ T GT YL + + V K+ PN++D++R E +INT T
Sbjct: 953 VARKLQAAGLELMGTRGTVNYLAQHGVFMDTVKKVHDGSPNVIDMMRRDEVDLIINTPT- 1011
Query: 1013 GKQPARDGFRIRRESVENGVACLTSLDTAEAILRVLESM 1051
KQ RDG RIRR +V+ V +T++ A A +E+M
Sbjct: 1012 SKQSRRDGSRIRRAAVDFKVPYITTIQAASAAAAAIETM 1050
Lambda K H
0.316 0.135 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2761
Number of extensions: 116
Number of successful extensions: 17
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1071
Length of database: 1070
Length adjustment: 45
Effective length of query: 1026
Effective length of database: 1025
Effective search space: 1051650
Effective search space used: 1051650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Align candidate WP_011022129.1 MA_RS11130 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.30510.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30510.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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