Alignments for a candidate for ilvC in Methanosarcina acetivorans C2A

Align ketol-acid reductoisomerase (NAD+) (EC 1.1.1.382); ketol-acid reductoisomerase (NADP+) (EC 1.1.1.86) (characterized)
to candidate WP_011023690.1 MA_RS19745 ketol-acid reductoisomerase

Query= BRENDA::C8WR67
         (344 letters)



>NCBI__GCF_000007345.1:WP_011023690.1
          Length = 335

 Score =  440 bits (1132), Expect = e-128
 Identities = 218/335 (65%), Positives = 266/335 (79%), Gaps = 1/335 (0%)

Query: 1   MEKIYYDADISIQPLADKRIAVIGYGSQGHAHAQNLRDSGFDVVIGLRPGSS-WAKAEAD 59
           M  I YD + +   L DK IA++GYGSQGHAHA+NL +SG +VV+GLR GSS WAKAE+D
Sbjct: 1   MATIIYDNETTFDALKDKTIAIMGYGSQGHAHARNLHESGLNVVVGLRKGSSSWAKAESD 60

Query: 60  GFRVMAVGEAVEESDVIMILLPDERQPAVYEREIRPYLTAGKALAFAHGFNIHFSQIQPP 119
           G +VM V EA + +DVIMILLPDE+Q +VY  +I P L AG AL FAHGFNIH++QI PP
Sbjct: 61  GLKVMTVEEAAKAADVIMILLPDEKQASVYYSQIEPSLEAGNALVFAHGFNIHYNQIVPP 120

Query: 120 KDVDVFMVAPKGPGHLVRRVYEAGGGVPALIAVHQDASGQAKDLALAYARGIGAGRAGIL 179
           KDVDVFMVAPKGPGH+VRR Y  G GVP LIAV+QDA+G+A+DLALAYA+GIGA RAG+ 
Sbjct: 121 KDVDVFMVAPKGPGHIVRRTYTEGIGVPGLIAVYQDATGKARDLALAYAKGIGATRAGVY 180

Query: 180 TTTFREETETDLFGEQAVLCGGLSALIKAGFETLVEAGYQPEIAYFECLHEMKLIVDLIY 239
            TTFREETETDLFGEQ  LCGGLSALIK  FE LVEAGYQPE+AYFE  HE+KLIVDLIY
Sbjct: 181 ETTFREETETDLFGEQVDLCGGLSALIKTAFEVLVEAGYQPEMAYFETCHEVKLIVDLIY 240

Query: 240 EGGLEYMRYSISDTAQWGDFTSGPRIINEETKKEMRRILADIQSGAFAKSWILENQANRP 299
           EGGLE M +S+S+TA++G  T GPRIINEE+++ M   LA IQ+G FAK ++LE   N P
Sbjct: 241 EGGLERMWHSVSNTAEYGGMTVGPRIINEESREAMYEALARIQNGEFAKEFVLEGMVNHP 300

Query: 300 MFNAINRRELEHPIEVVGRKLRSMMPFIKAKRPGD 334
           +  A+ R+E EHP+EVVG+++R+ +P++  K   D
Sbjct: 301 VLKAMERQEKEHPLEVVGKEIRANIPWLNKKIDDD 335


Lambda     K      H
   0.320    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 375
Number of extensions: 14
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 335
Length adjustment: 28
Effective length of query: 316
Effective length of database: 307
Effective search space:    97012
Effective search space used:    97012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_011023690.1 MA_RS19745 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))

Software error:

../bin/blast/fastacmd -i /tmp/list.11002.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11002.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.