Alignments for a candidate for serB in Methanosarcina acetivorans C2A

Align Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 (characterized)
to candidate WP_011024307.1 MA_RS23145 phosphoserine phosphatase SerB

Query= SwissProt::Q58989
         (211 letters)



>NCBI__GCF_000007345.1:WP_011024307.1
          Length = 231

 Score =  183 bits (465), Expect = 2e-51
 Identities = 95/208 (45%), Positives = 140/208 (67%)

Query: 4   KKKLILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDL 63
           + KLI+FD DSTL++ ETIDE+AR AGV  +V++ITK AM G L+FEQ+L +R  LLK L
Sbjct: 6   ENKLIVFDMDSTLIDAETIDELARAAGVISKVEEITKRAMYGDLDFEQALAERARLLKGL 65

Query: 64  PIEKVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRL 123
            +E    A+ +I    GA E +  +K  GY  A++SGGF IA  +I + LG+D+  +N L
Sbjct: 66  SLETALDAVDQINLMPGAAELVLYVKQLGYKTAMISGGFTIAAERIGKTLGIDFVVSNEL 125

Query: 124 IVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKIA 183
           +++DG LTG+V G V + ++K ++ E++A +  I  +  V VGDGAND  +F+ AG  IA
Sbjct: 126 LMEDGCLTGEVVGPVTQSDSKAKVFEELAWLYNIRPDQCVVVGDGANDACIFEIAGFAIA 185

Query: 184 FCAKPILKEKADICIEKRDLREILKYIK 211
           F  KPIL+E AD+ I  +DLR ++  ++
Sbjct: 186 FNPKPILREYADVVITIKDLRAVIPVLE 213


Lambda     K      H
   0.314    0.136    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 131
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 231
Length adjustment: 22
Effective length of query: 189
Effective length of database: 209
Effective search space:    39501
Effective search space used:    39501
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)

Align candidate WP_011024307.1 MA_RS23145 (phosphoserine phosphatase SerB)
to HMM TIGR00338 (serB: phosphoserine phosphatase SerB (EC 3.1.3.3))

Software error:

../bin/blast/fastacmd -i /tmp/list.4824.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.4824.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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