GapMind for catabolism of small carbon sources

 

Protein WP_011155697.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011155697.1

Length: 384 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 42 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
N-acetyl-D-glucosamine catabolism SMc02869 med N-Acetyl-D-glucosamine ABC transport system, ATPase component (characterized) 48% 92% 306.6 ABC transporter for D-Sorbitol, ATPase component 46% 304.3
D-glucosamine (chitosamine) catabolism SMc02869 med N-Acetyl-D-glucosamine ABC transport system, ATPase component (characterized) 48% 92% 306.6 ABC transporter for D-Sorbitol, ATPase component 46% 304.3
D-sorbitol (glucitol) catabolism mtlK med ABC transporter for D-Sorbitol, ATPase component (characterized) 46% 100% 304.3 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
lactose catabolism lacK med ABC transporter for Lactose, ATPase component (characterized) 48% 99% 303.5 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-maltose catabolism thuK med ThuK aka RB0314 aka SMB20328, component of Trehalose/maltose/sucrose porter (trehalose inducible) (characterized) 46% 98% 293.9 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
sucrose catabolism thuK med ThuK aka RB0314 aka SMB20328, component of Trehalose/maltose/sucrose porter (trehalose inducible) (characterized) 46% 98% 293.9 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
trehalose catabolism thuK med ThuK aka RB0314 aka SMB20328, component of Trehalose/maltose/sucrose porter (trehalose inducible) (characterized) 46% 98% 293.9 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-mannitol catabolism mtlK med SmoK aka POLK, component of Hexitol (glucitol; mannitol) porter (characterized) 45% 100% 287 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-cellobiose catabolism gtsD med ABC transporter for D-Galactose and D-Glucose, ATPase component (characterized) 45% 95% 286.6 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-galactose catabolism PfGW456L13_1897 med ABC transporter for D-Galactose and D-Glucose, ATPase component (characterized) 45% 95% 286.6 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-glucose catabolism gtsD med ABC transporter for D-Galactose and D-Glucose, ATPase component (characterized) 45% 95% 286.6 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
lactose catabolism gtsD med ABC transporter for D-Galactose and D-Glucose, ATPase component (characterized) 45% 95% 286.6 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-maltose catabolism gtsD med ABC transporter for D-Galactose and D-Glucose, ATPase component (characterized) 45% 95% 286.6 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
sucrose catabolism gtsD med ABC transporter for D-Galactose and D-Glucose, ATPase component (characterized) 45% 95% 286.6 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
trehalose catabolism gtsD med ABC transporter for D-Galactose and D-Glucose, ATPase component (characterized) 45% 95% 286.6 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-xylose catabolism gtsD med ABC transporter for D-Glucose-6-Phosphate, ATPase component (characterized) 45% 97% 282.7 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
xylitol catabolism Dshi_0546 med ABC transporter for Xylitol, ATPase component (characterized) 45% 100% 280.4 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-glucosamine (chitosamine) catabolism SM_b21216 med ABC transporter for D-Glucosamine, ATPase component (characterized) 45% 100% 280 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-maltose catabolism aglK med ABC transporter for D-Maltose and D-Trehalose, ATPase component (characterized) 43% 99% 275.8 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-maltose catabolism malK med Maltose/maltodextrin import ATP-binding protein MalK; EC 7.5.2.1 (characterized) 44% 97% 275.8 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
sucrose catabolism aglK med ABC transporter for D-Maltose and D-Trehalose, ATPase component (characterized) 43% 99% 275.8 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
trehalose catabolism aglK med ABC transporter for D-Maltose and D-Trehalose, ATPase component (characterized) 43% 99% 275.8 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-mannose catabolism TT_C0211 med Sugar-binding transport ATP-binding protein aka MalK1 aka TT_C0211, component of The trehalose/maltose/sucrose/palatinose porter (TTC1627-9) plus MalK1 (ABC protein, shared with 3.A.1.1.24) (Silva et al. 2005; Chevance et al., 2006). The receptor (TTC1627) binds disaccharide alpha-glycosides, namely trehalose (alpha-1,1), sucrose (alpha-1,2), maltose (alpha-1,4), palatinose (alpha-1,6) and glucose (characterized) 44% 99% 273.9 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-maltose catabolism malK_Bb med ABC-type maltose transport, ATP binding protein (characterized, see rationale) 47% 87% 272.7 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
xylitol catabolism HSERO_RS17020 med ABC-type sugar transport system, ATPase component protein (characterized, see rationale) 42% 91% 271.2 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-cellobiose catabolism aglK' med Maltose/maltodextrin import ATP-binding protein; EC 3.6.3.19 (characterized, see rationale) 42% 96% 270 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-glucose catabolism aglK' med Maltose/maltodextrin import ATP-binding protein; EC 3.6.3.19 (characterized, see rationale) 42% 96% 270 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
lactose catabolism aglK' med Maltose/maltodextrin import ATP-binding protein; EC 3.6.3.19 (characterized, see rationale) 42% 96% 270 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-maltose catabolism aglK' med Maltose/maltodextrin import ATP-binding protein; EC 3.6.3.19 (characterized, see rationale) 42% 96% 270 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
sucrose catabolism aglK' med Maltose/maltodextrin import ATP-binding protein; EC 3.6.3.19 (characterized, see rationale) 42% 96% 270 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
trehalose catabolism aglK' med Maltose/maltodextrin import ATP-binding protein; EC 3.6.3.19 (characterized, see rationale) 42% 96% 270 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
L-fucose catabolism SM_b21106 med ABC transporter for L-Fucose, ATPase component (characterized) 45% 100% 267.3 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-maltose catabolism malK_Aa med ABC-type maltose transporter (EC 7.5.2.1) (characterized) 43% 95% 261.9 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-cellobiose catabolism msiK med MsiK protein, component of The cellobiose/cellotriose (and possibly higher cellooligosaccharides), CebEFGMsiK [MsiK functions to energize several ABC transporters including those for maltose/maltotriose and trehalose] (characterized) 43% 96% 257.7 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
L-arabinose catabolism xacK med Xylose/arabinose import ATP-binding protein XacK; EC 7.5.2.13 (characterized, see rationale) 44% 94% 250.4 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
L-arabinose catabolism xacJ med Xylose/arabinose import ATP-binding protein XacJ; EC 7.5.2.13 (characterized, see rationale) 42% 94% 245.4 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-maltose catabolism musK med ABC-type maltose transporter (EC 7.5.2.1) (characterized) 43% 95% 243.4 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-cellobiose catabolism SMc04256 med ABC transporter for D-Cellobiose and D-Salicin, ATPase component (characterized) 41% 98% 240 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
trehalose catabolism malK med MsmK aka SMU.882, component of The raffinose/stachyose transporter, MsmEFGK (MalK (3.A.1.1.27) can probably substitute for MsmK; Webb et al., 2008). This system may also transport melibiose, isomaltotriose and sucrose as well as isomaltosaccharides (characterized) 46% 73% 239.2 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-maltose catabolism malK_Sm med MalK, component of Maltose/Maltotriose/maltodextrin (up to 7 glucose units) transporters MalXFGK (MsmK (3.A.1.1.28) can probably substitute for MalK; Webb et al., 2008) (characterized) 42% 81% 231.1 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
trehalose catabolism treV med TreV, component of Trehalose porter (characterized) 40% 87% 224.9 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6
D-maltose catabolism malK1 lo MalK; aka Sugar ABC transporter, ATP-binding protein, component of The maltose, maltotriose, mannotetraose (MalE1)/maltose, maltotriose, trehalose (MalE2) porter (Nanavati et al., 2005). For MalG1 (823aas) and MalG2 (833aas), the C-terminal transmembrane domain with 6 putative TMSs is preceded by a single N-terminal TMS and a large (600 residue) hydrophilic region showing sequence similarity to MLP1 and 2 (9.A.14; e-12 & e-7) as well as other proteins (characterized) 50% 69% 251.9 N-Acetyl-D-glucosamine ABC transport system, ATPase component 48% 306.6

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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