Alignments for a candidate for leuB in Rhodopseudomonas palustris CGA009

Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate WP_011155795.1 TX73_RS01170 3-isopropylmalate dehydrogenase

Query= BRENDA::P24404
         (370 letters)



>NCBI__GCF_000195775.1:WP_011155795.1
          Length = 370

 Score =  529 bits (1362), Expect = e-155
 Identities = 264/370 (71%), Positives = 306/370 (82%)

Query: 1   MTVRSLFLLPGDGIGPEAMTEVRKLIEYMNSAHNAGFTVSEGLVGGSAYDAHGVAISDAD 60
           M    L LLPGDGIG E M EV +LI+++N A  A F    GLVGG+AYDA  VAI+DA 
Sbjct: 1   MATHKLLLLPGDGIGTEVMAEVSRLIDWLNKAGIASFETEHGLVGGAAYDADKVAITDAT 60

Query: 61  MEKALAADAILFGAVGGPKWDGVPYEHRPEAGLLRLRKDLELFANLRPAICYPALAAASS 120
           M  A A+DA++FGAVGGPKWDGVPY+ RPEAGLLRLRKDL LFANLRPA+CYPALA +SS
Sbjct: 61  MALAQASDAVIFGAVGGPKWDGVPYDARPEAGLLRLRKDLGLFANLRPAVCYPALADSSS 120

Query: 121 LKPELVEGLDILIVRELTGGVYFGEPKQIIDLGNGQKRGIDTQIYDTFEIERIASVAFEL 180
           LK ++VEGLDI+IVRELTGGVYFGEPK I DLGNGQKR +DTQ+YDT+EIERI  VAF+L
Sbjct: 121 LKRDVVEGLDIMIVRELTGGVYFGEPKTITDLGNGQKRAVDTQVYDTYEIERIGRVAFDL 180

Query: 181 ARSRDNRVCSMEKRNVMKSGVLWNQVVTETHAAKYKDVQLEHMLADAGGMQLVRKPKQFD 240
           AR R N+V SMEKRNVMK+GVLWN+V+T  H  +YKDVQL+H LAD+GGM LV+ PKQFD
Sbjct: 181 ARKRRNKVTSMEKRNVMKTGVLWNEVITAVHDREYKDVQLDHQLADSGGMNLVKWPKQFD 240

Query: 241 VIVTDNLFGDMLSDVAAMLTGSLGMLPSASLGAPDAKTGKRKAMYEPVHGSAPDIAGKSI 300
           VIVTDNLFGDMLSD+AAMLTGSLGMLPSASLG  DAKTGKRK+MYEPVHGSAPDIAGK +
Sbjct: 241 VIVTDNLFGDMLSDIAAMLTGSLGMLPSASLGEVDAKTGKRKSMYEPVHGSAPDIAGKGM 300

Query: 301 ANPIAMIASFAMCLRYSFNMVDEATKLEAAIANVLDKGIRTADIMADGCRQVGTSDMGDA 360
           ANP+AM+ASF M LRYS +M   A KL+ AIA VL KG+RTADI ++G   + TS MG+A
Sbjct: 301 ANPVAMLASFGMALRYSLDMGALADKLDEAIAAVLAKGLRTADIKSEGTTVISTSQMGEA 360

Query: 361 VLAEFKALSA 370
           ++ E +AL A
Sbjct: 361 IVTELQALHA 370


Lambda     K      H
   0.319    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 486
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 370
Length adjustment: 30
Effective length of query: 340
Effective length of database: 340
Effective search space:   115600
Effective search space used:   115600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_011155795.1 TX73_RS01170 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.31807.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31807.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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