GapMind for catabolism of small carbon sources

 

Protein WP_011156217.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011156217.1

Length: 258 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 19 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
4-hydroxybenzoate catabolism badK hi BadK (characterized) 100% 100% 501.5 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 64% 338.2
phenylacetate catabolism badK hi BadK (characterized) 100% 100% 501.5 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 64% 338.2
L-phenylalanine catabolism badK hi BadK (characterized) 100% 100% 501.5 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 64% 338.2
4-hydroxybenzoate catabolism ech med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 64% 100% 338.2 BadK 100% 501.5
4-hydroxybenzoate catabolism paaF med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 64% 100% 338.2 BadK 100% 501.5
L-arginine catabolism ech med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 64% 100% 338.2 BadK 100% 501.5
L-citrulline catabolism ech med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 64% 100% 338.2 BadK 100% 501.5
L-lysine catabolism ech med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 64% 100% 338.2 BadK 100% 501.5
phenylacetate catabolism ech med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 64% 100% 338.2 BadK 100% 501.5
phenylacetate catabolism paaF med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 64% 100% 338.2 BadK 100% 501.5
L-phenylalanine catabolism ech med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 64% 100% 338.2 BadK 100% 501.5
L-phenylalanine catabolism paaF med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 64% 100% 338.2 BadK 100% 501.5
L-proline catabolism ech med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 64% 100% 338.2 BadK 100% 501.5
L-valine catabolism ech med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 64% 100% 338.2 BadK 100% 501.5
L-isoleucine catabolism hpcD med 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 42% 100% 190.3 BadK 100% 501.5
propionate catabolism hpcD med 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 42% 100% 190.3 BadK 100% 501.5
L-threonine catabolism hpcD med 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 42% 100% 190.3 BadK 100% 501.5
L-valine catabolism hpcD med 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 42% 100% 190.3 BadK 100% 501.5
L-valine catabolism bch lo 3-hydroxy-isobutyryl-CoA hydrolase (EC 3.1.2.4) (characterized) 31% 52% 90.9 BadK 100% 501.5

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

New query