GapMind for catabolism of small carbon sources

 

Protein WP_011156314.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011156314.1

Length: 348 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 14 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
putrescine catabolism potA med spermidine/putrescine ABC transporter, ATP-binding protein PotA; EC 3.6.3.31 (characterized) 43% 90% 238.8 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9
L-histidine catabolism aapP med ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (characterized) 41% 88% 167.2 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9
L-histidine catabolism hutV lo ABC transporter for L-Histidine, ATPase component (characterized) 38% 84% 168.3 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9
L-glutamate catabolism gltL lo GluA aka CGL1950, component of Glutamate porter (characterized) 40% 99% 163.3 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9
L-arginine catabolism artP lo Arginine transport ATP-binding protein ArtM (characterized) 39% 100% 162.9 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9
D-glucosamine (chitosamine) catabolism AO353_21725 lo ABC transporter for D-glucosamine, ATPase component (characterized) 38% 92% 162.9 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9
L-proline catabolism hutV lo HutV aka HISV aka R02702 aka SMC00670, component of Uptake system for hisitidine, proline, proline-betaine and glycine-betaine (characterized) 36% 86% 161.8 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9
L-asparagine catabolism glnQ lo Glutamine ABC transporter ATP-binding protein, component of Glutamine transporter, GlnQP. Takes up glutamine, asparagine and glutamate which compete for each other for binding both substrate and the transmembrane protein constituent of the system (Fulyani et al. 2015). Tandem substrate binding domains (SBDs) differ in substrate specificity and affinity, allowing cells to efficiently accumulate different amino acids via a single ABC transporter. Analysis revealed the roles of individual residues in determining the substrate affinity (characterized) 38% 97% 158.7 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9
L-asparagine catabolism bztD lo BztD, component of Glutamate/glutamine/aspartate/asparagine porter (characterized) 38% 92% 158.3 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9
L-aspartate catabolism bztD lo BztD, component of Glutamate/glutamine/aspartate/asparagine porter (characterized) 38% 92% 158.3 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9
L-histidine catabolism bgtA lo BgtA aka SLR1735, component of Arginine/lysine/histidine/glutamine porter (characterized) 39% 95% 157.9 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9
L-lysine catabolism hisP lo BgtA aka SLR1735, component of Arginine/lysine/histidine/glutamine porter (characterized) 39% 95% 157.9 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9
L-citrulline catabolism PS417_17605 lo ATP-binding cassette domain-containing protein; SubName: Full=Amino acid transporter; SubName: Full=Histidine ABC transporter ATP-binding protein; SubName: Full=Histidine transport system ATP-binding protein (characterized, see rationale) 38% 91% 155.6 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9
L-arabinose catabolism xylGsa lo Xylose/arabinose import ATP-binding protein XylG; EC 7.5.2.13 (characterized, see rationale) 33% 86% 124.4 CysA aka B2422, component of Sulfate/thiosulfate porter 52% 318.9

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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