GapMind for catabolism of small carbon sources

 

Protein WP_011157173.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011157173.1

Length: 390 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 18 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-leucine catabolism liuA hi Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (characterized) 78% 98% 608.2
L-lysine catabolism bcd med butyryl-CoA dehydrogenase; EC 1.3.99.2 (characterized) 43% 100% 310.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
4-hydroxybenzoate catabolism Ch1CoA med cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) (characterized) 41% 99% 260.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
phenylacetate catabolism Ch1CoA med cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) (characterized) 41% 99% 260.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
L-phenylalanine catabolism Ch1CoA med cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) (characterized) 41% 99% 260.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
L-isoleucine catabolism acdH lo 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (characterized) 40% 99% 272.7 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
L-valine catabolism acdH lo isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (characterized) 38% 99% 271.9 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
4-hydroxybenzoate catabolism gcdH lo glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) (characterized) 34% 95% 221.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
L-arginine catabolism gcdH lo glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) (characterized) 34% 95% 221.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
L-citrulline catabolism gcdH lo glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) (characterized) 34% 95% 221.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
L-lysine catabolism gcdH lo glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) (characterized) 34% 95% 221.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
phenylacetate catabolism gcdH lo glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) (characterized) 34% 95% 221.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
L-phenylalanine catabolism gcdH lo glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) (characterized) 34% 95% 221.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
L-proline catabolism gcdH lo glutaryl-CoA dehydrogenase (ETF) (EC 1.3.8.6) (characterized) 34% 95% 221.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
L-isoleucine catabolism pco lo acyl-CoA oxidase (EC 1.3.3.6) (characterized) 32% 85% 184.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
propionate catabolism pco lo acyl-CoA oxidase (EC 1.3.3.6) (characterized) 32% 85% 184.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
L-threonine catabolism pco lo acyl-CoA oxidase (EC 1.3.3.6) (characterized) 32% 85% 184.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2
L-valine catabolism pco lo acyl-CoA oxidase (EC 1.3.3.6) (characterized) 32% 85% 184.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 78% 608.2

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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