GapMind for catabolism of small carbon sources

 

Protein WP_011157317.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011157317.1

Length: 259 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 24 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
4-hydroxybenzoate catabolism ech hi trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 60% 100% 305.4 AcuK 56% 269.6
L-arginine catabolism ech hi trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 60% 100% 305.4 AcuK 56% 269.6
L-citrulline catabolism ech hi trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 60% 100% 305.4 AcuK 56% 269.6
L-isoleucine catabolism ech hi trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 60% 100% 305.4 AcuK 56% 269.6
L-lysine catabolism ech hi trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 60% 100% 305.4 AcuK 56% 269.6
phenylacetate catabolism ech hi trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 60% 100% 305.4 AcuK 56% 269.6
L-phenylalanine catabolism ech hi trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 60% 100% 305.4 AcuK 56% 269.6
L-proline catabolism ech hi trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 60% 100% 305.4 AcuK 56% 269.6
L-valine catabolism ech hi trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 60% 100% 305.4 AcuK 56% 269.6
4-hydroxybenzoate catabolism paaF med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 60% 100% 305.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) 60% 303.1
phenylacetate catabolism paaF med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 60% 100% 305.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) 60% 303.1
L-phenylalanine catabolism paaF med trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) (characterized) 60% 100% 305.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) 60% 303.1
4-hydroxybenzoate catabolism badK med BadK (characterized) 50% 98% 244.2 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 60% 305.4
phenylacetate catabolism badK med BadK (characterized) 50% 98% 244.2 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 60% 305.4
L-phenylalanine catabolism badK med BadK (characterized) 50% 98% 244.2 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 60% 305.4
L-isoleucine catabolism hpcD med 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 44% 99% 201.4 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 60% 305.4
propionate catabolism hpcD med 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 44% 99% 201.4 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 60% 305.4
L-threonine catabolism hpcD med 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 44% 99% 201.4 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 60% 305.4
L-valine catabolism hpcD med 3-hydroxypropionyl-CoA dehydratase (EC 4.2.1.116) (characterized) 44% 99% 201.4 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 60% 305.4
L-leucine catabolism liuC lo methylglutaconyl-CoA hydratase (EC 4.2.1.18) (characterized) 38% 85% 158.3 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 60% 305.4
4-hydroxybenzoate catabolism dch lo cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) (characterized) 35% 99% 134.8 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 60% 305.4
phenylacetate catabolism dch lo cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) (characterized) 35% 99% 134.8 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 60% 305.4
L-phenylalanine catabolism dch lo cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) (characterized) 35% 99% 134.8 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 60% 305.4
L-valine catabolism bch lo 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; 3-hydroxyisobutyryl-coenzyme A hydrolase; HIB-CoA hydrolase; HIBYL-CoA-H; EC 3.1.2.4 (characterized) 34% 58% 112.8 trans-2,3-dehydroadipyl-CoA hydratase (EC 4.2.1.17) 60% 305.4

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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