GapMind for catabolism of small carbon sources

 

Protein WP_011157710.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011157710.1

Length: 568 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 11 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-arabinose catabolism xacD hi L-arabonate dehydratase (EC 4.2.1.25) (characterized) 50% 97% 509.6
D-galactose catabolism dgoD med L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 (characterized) 46% 95% 468 L-arabonate dehydratase (EC 4.2.1.25) 50% 509.6
lactose catabolism dgoD med L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 (characterized) 46% 95% 468 L-arabonate dehydratase (EC 4.2.1.25) 50% 509.6
D-xylose catabolism xad med Xylonate dehydratase (EC 4.2.1.82) (characterized) 40% 89% 352.1 L-arabonate dehydratase (EC 4.2.1.25) 50% 509.6
D-cellobiose catabolism edd lo phosphogluconate dehydratase (characterized) 31% 90% 195.7 L-arabonate dehydratase (EC 4.2.1.25) 50% 509.6
D-gluconate catabolism edd lo phosphogluconate dehydratase (characterized) 31% 90% 195.7 L-arabonate dehydratase (EC 4.2.1.25) 50% 509.6
D-glucose catabolism edd lo phosphogluconate dehydratase (characterized) 31% 90% 195.7 L-arabonate dehydratase (EC 4.2.1.25) 50% 509.6
lactose catabolism edd lo phosphogluconate dehydratase (characterized) 31% 90% 195.7 L-arabonate dehydratase (EC 4.2.1.25) 50% 509.6
D-maltose catabolism edd lo phosphogluconate dehydratase (characterized) 31% 90% 195.7 L-arabonate dehydratase (EC 4.2.1.25) 50% 509.6
sucrose catabolism edd lo phosphogluconate dehydratase (characterized) 31% 90% 195.7 L-arabonate dehydratase (EC 4.2.1.25) 50% 509.6
trehalose catabolism edd lo phosphogluconate dehydratase (characterized) 31% 90% 195.7 L-arabonate dehydratase (EC 4.2.1.25) 50% 509.6

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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