GapMind for catabolism of small carbon sources

 

Protein WP_011157855.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011157855.1

Length: 563 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 11 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
4-hydroxybenzoate catabolism acs lo Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 (characterized) 39% 98% 341.3 long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) 61% 645.2
L-lactate catabolism acs lo Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 (characterized) 39% 98% 341.3 long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) 61% 645.2
acetate catabolism acs lo Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 (characterized) 39% 98% 341.3 long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) 61% 645.2
2'-deoxyinosine catabolism acs lo Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 (characterized) 39% 98% 341.3 long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) 61% 645.2
2-deoxy-D-ribose catabolism acs lo Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 (characterized) 39% 98% 341.3 long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) 61% 645.2
ethanol catabolism acs lo Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 (characterized) 39% 98% 341.3 long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) 61% 645.2
L-threonine catabolism acs lo Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 (characterized) 39% 98% 341.3 long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) 61% 645.2
thymidine catabolism acs lo Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 (characterized) 39% 98% 341.3 long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) 61% 645.2
L-tryptophan catabolism acs lo Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 (characterized) 39% 98% 341.3 long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) 61% 645.2
propionate catabolism prpE lo 4-hydroxybutyrate-CoA ligase (EC 6.2.1.40) (characterized) 36% 89% 273.9 long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) 61% 645.2
4-hydroxybenzoate catabolism hcl lo Benzoate--CoA ligase; Benzoyl-CoA synthetase; EC 6.2.1.25 (characterized) 30% 91% 187.2 long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) 61% 645.2

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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