GapMind for catabolism of small carbon sources

 

Protein WP_011157858.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011157858.1

Length: 375 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 14 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism acdH hi Short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) (characterized) 75% 100% 564.7
L-valine catabolism acdH hi 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) (characterized) 73% 100% 558.1
L-lysine catabolism bcd med butanoyl-CoA dehydrogenase (NAD+, ferredoxin) (subunit 1/3) (EC 1.3.1.109); short-chain acyl-CoA dehydrogenase (subunit 1/2) (EC 1.3.8.1) (characterized) 47% 97% 344 Short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) 75% 564.7
L-leucine catabolism liuA med acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) (characterized) 42% 97% 263.1 Short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) 75% 564.7
4-hydroxybenzoate catabolism Ch1CoA med cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) (characterized) 41% 98% 260.8 Short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) 75% 564.7
phenylacetate catabolism Ch1CoA med cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) (characterized) 41% 98% 260.8 Short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) 75% 564.7
L-phenylalanine catabolism Ch1CoA med cyclohex-1-ene-1-carbonyl-CoA dehydrogenase (EC 1.3.8.10) (characterized) 41% 98% 260.8 Short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) 75% 564.7
4-hydroxybenzoate catabolism gcdH lo glutaryl-CoA dehydrogenase (EC 1.3.8.6) (characterized) 35% 93% 213.4 Short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) 75% 564.7
L-arginine catabolism gcdH lo glutaryl-CoA dehydrogenase (EC 1.3.8.6) (characterized) 35% 93% 213.4 Short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) 75% 564.7
L-citrulline catabolism gcdH lo glutaryl-CoA dehydrogenase (EC 1.3.8.6) (characterized) 35% 93% 213.4 Short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) 75% 564.7
L-lysine catabolism gcdH lo glutaryl-CoA dehydrogenase (EC 1.3.8.6) (characterized) 35% 93% 213.4 Short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) 75% 564.7
phenylacetate catabolism gcdH lo glutaryl-CoA dehydrogenase (EC 1.3.8.6) (characterized) 35% 93% 213.4 Short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) 75% 564.7
L-phenylalanine catabolism gcdH lo glutaryl-CoA dehydrogenase (EC 1.3.8.6) (characterized) 35% 93% 213.4 Short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) 75% 564.7
L-proline catabolism gcdH lo glutaryl-CoA dehydrogenase (EC 1.3.8.6) (characterized) 35% 93% 213.4 Short-chain acyl-CoA dehydrogenase (EC 1.3.8.1) 75% 564.7

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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